Hb_000071_140

Information

Type -
Description -
Location Contig71: 166941-170228
Sequence    

Annotation

kegg
ID rcu:RCOM_1238310
description hypothetical protein
nr
ID XP_012065031.1
description PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
swissprot
ID F4HSD5
description Protein TRM32 OS=Arabidopsis thaliana GN=TRM32 PE=2 SV=1
trembl
ID A0A067LAM0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55187: 167052-167743 , PASA_asmbl_55188: 168941-169658
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000071_140 0.0 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
2 Hb_001489_120 0.0838134613 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
3 Hb_002534_050 0.1031792918 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
4 Hb_048755_020 0.1072756153 - - hypothetical protein JCGZ_09860 [Jatropha curcas]
5 Hb_000069_730 0.110431037 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X1 [Jatropha curcas]
6 Hb_004032_310 0.1111115313 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
7 Hb_001258_150 0.1124942291 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
8 Hb_011360_090 0.1139123547 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
9 Hb_009040_010 0.1212932918 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
10 Hb_001437_010 0.1228134687 - - PREDICTED: probable receptor-like protein kinase At1g33260 [Jatropha curcas]
11 Hb_001662_170 0.1232070695 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
12 Hb_000186_200 0.1237753453 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
13 Hb_006111_030 0.1260141941 - - PREDICTED: phospholipase A(1) LCAT3 isoform X1 [Jatropha curcas]
14 Hb_000803_060 0.1294730619 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
15 Hb_012787_040 0.1302379073 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
16 Hb_000084_240 0.1321208314 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
17 Hb_002793_060 0.1328823763 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Populus euphratica]
18 Hb_007313_070 0.1334089491 - - PREDICTED: gibberellin receptor GID1C [Jatropha curcas]
19 Hb_000221_060 0.1350185632 - - -
20 Hb_007007_080 0.1351967096 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000071_140 Hb_000071_140 Hb_001489_120 Hb_001489_120 Hb_000071_140--Hb_001489_120 Hb_002534_050 Hb_002534_050 Hb_000071_140--Hb_002534_050 Hb_048755_020 Hb_048755_020 Hb_000071_140--Hb_048755_020 Hb_000069_730 Hb_000069_730 Hb_000071_140--Hb_000069_730 Hb_004032_310 Hb_004032_310 Hb_000071_140--Hb_004032_310 Hb_001258_150 Hb_001258_150 Hb_000071_140--Hb_001258_150 Hb_001489_120--Hb_001258_150 Hb_001489_120--Hb_004032_310 Hb_000803_060 Hb_000803_060 Hb_001489_120--Hb_000803_060 Hb_002793_060 Hb_002793_060 Hb_001489_120--Hb_002793_060 Hb_006414_020 Hb_006414_020 Hb_001489_120--Hb_006414_020 Hb_009040_010 Hb_009040_010 Hb_002534_050--Hb_009040_010 Hb_001662_170 Hb_001662_170 Hb_002534_050--Hb_001662_170 Hb_011360_090 Hb_011360_090 Hb_002534_050--Hb_011360_090 Hb_002534_050--Hb_001489_120 Hb_002534_050--Hb_001258_150 Hb_007313_070 Hb_007313_070 Hb_048755_020--Hb_007313_070 Hb_001437_010 Hb_001437_010 Hb_048755_020--Hb_001437_010 Hb_000045_260 Hb_000045_260 Hb_048755_020--Hb_000045_260 Hb_004994_300 Hb_004994_300 Hb_048755_020--Hb_004994_300 Hb_000186_200 Hb_000186_200 Hb_048755_020--Hb_000186_200 Hb_000084_240 Hb_000084_240 Hb_000069_730--Hb_000084_240 Hb_000069_730--Hb_001258_150 Hb_000069_730--Hb_002534_050 Hb_005499_010 Hb_005499_010 Hb_000069_730--Hb_005499_010 Hb_090782_010 Hb_090782_010 Hb_000069_730--Hb_090782_010 Hb_003752_120 Hb_003752_120 Hb_004032_310--Hb_003752_120 Hb_000448_060 Hb_000448_060 Hb_004032_310--Hb_000448_060 Hb_004032_310--Hb_001662_170 Hb_004032_310--Hb_004994_300 Hb_002915_070 Hb_002915_070 Hb_004032_310--Hb_002915_070 Hb_001258_150--Hb_000803_060 Hb_001258_150--Hb_004032_310 Hb_012725_040 Hb_012725_040 Hb_001258_150--Hb_012725_040 Hb_001258_150--Hb_011360_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.21457 9.94904 3.33465 2.04699 0.741412 1.24632
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.806413 0.846086 0.428845 0.81869 1.68778

CAGE analysis