Hb_000071_180

Information

Type -
Description -
Location Contig71: 221132-227727
Sequence    

Annotation

kegg
ID rcu:RCOM_1238680
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_012065043.1
description PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29 isoform X1 [Jatropha curcas]
swissprot
ID O49289
description Putative DEAD-box ATP-dependent RNA helicase 29 OS=Arabidopsis thaliana GN=RH29 PE=3 SV=1
trembl
ID A0A067LI41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05707 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dead-box atp-dependent rna helicase 29 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55203: 221388-226587 , PASA_asmbl_55204: 226627-227704
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000071_180 0.0 - - PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29 isoform X1 [Jatropha curcas]
2 Hb_011716_020 0.0993178087 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
3 Hb_002600_140 0.1049459038 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
4 Hb_002028_170 0.1088446977 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
5 Hb_011928_020 0.1096562671 - - something about silencing protein sas10, putative [Ricinus communis]
6 Hb_006114_030 0.1110413955 transcription factor TF Family: SET hypothetical protein CISIN_1g011639mg [Citrus sinensis]
7 Hb_000271_090 0.1172609853 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_007632_240 0.1179595225 - - transporter, putative [Ricinus communis]
9 Hb_007805_010 0.1181504271 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]
10 Hb_000136_060 0.1189890246 - - hypothetical protein POPTR_0016s06250g [Populus trichocarpa]
11 Hb_001541_080 0.1217452035 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003916_010 0.1226497736 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
13 Hb_000317_250 0.1232674868 - - PREDICTED: calcium-dependent protein kinase SK5 isoform X1 [Jatropha curcas]
14 Hb_002974_060 0.1233294231 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
15 Hb_005608_020 0.1239321989 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
16 Hb_000038_080 0.1242543802 - - PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
17 Hb_012490_030 0.1247005343 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
18 Hb_001143_110 0.1249664655 - - hypothetical protein JCGZ_12107 [Jatropha curcas]
19 Hb_002551_070 0.1253515381 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
20 Hb_033834_060 0.1266501217 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000071_180 Hb_000071_180 Hb_011716_020 Hb_011716_020 Hb_000071_180--Hb_011716_020 Hb_002600_140 Hb_002600_140 Hb_000071_180--Hb_002600_140 Hb_002028_170 Hb_002028_170 Hb_000071_180--Hb_002028_170 Hb_011928_020 Hb_011928_020 Hb_000071_180--Hb_011928_020 Hb_006114_030 Hb_006114_030 Hb_000071_180--Hb_006114_030 Hb_000271_090 Hb_000271_090 Hb_000071_180--Hb_000271_090 Hb_011716_020--Hb_002028_170 Hb_002974_060 Hb_002974_060 Hb_011716_020--Hb_002974_060 Hb_011716_020--Hb_002600_140 Hb_000023_190 Hb_000023_190 Hb_011716_020--Hb_000023_190 Hb_002027_270 Hb_002027_270 Hb_011716_020--Hb_002027_270 Hb_000600_070 Hb_000600_070 Hb_011716_020--Hb_000600_070 Hb_002600_140--Hb_002974_060 Hb_000236_310 Hb_000236_310 Hb_002600_140--Hb_000236_310 Hb_005228_130 Hb_005228_130 Hb_002600_140--Hb_005228_130 Hb_007026_040 Hb_007026_040 Hb_002600_140--Hb_007026_040 Hb_007805_010 Hb_007805_010 Hb_002600_140--Hb_007805_010 Hb_003623_030 Hb_003623_030 Hb_002028_170--Hb_003623_030 Hb_000158_100 Hb_000158_100 Hb_002028_170--Hb_000158_100 Hb_000136_060 Hb_000136_060 Hb_002028_170--Hb_000136_060 Hb_007904_220 Hb_007904_220 Hb_002028_170--Hb_007904_220 Hb_000343_030 Hb_000343_030 Hb_002028_170--Hb_000343_030 Hb_001529_040 Hb_001529_040 Hb_011928_020--Hb_001529_040 Hb_000470_080 Hb_000470_080 Hb_011928_020--Hb_000470_080 Hb_000398_120 Hb_000398_120 Hb_011928_020--Hb_000398_120 Hb_003498_130 Hb_003498_130 Hb_011928_020--Hb_003498_130 Hb_002631_170 Hb_002631_170 Hb_011928_020--Hb_002631_170 Hb_002374_050 Hb_002374_050 Hb_006114_030--Hb_002374_050 Hb_004689_050 Hb_004689_050 Hb_006114_030--Hb_004689_050 Hb_033834_060 Hb_033834_060 Hb_006114_030--Hb_033834_060 Hb_003673_060 Hb_003673_060 Hb_006114_030--Hb_003673_060 Hb_000046_440 Hb_000046_440 Hb_006114_030--Hb_000046_440 Hb_002784_060 Hb_002784_060 Hb_006114_030--Hb_002784_060 Hb_006157_020 Hb_006157_020 Hb_000271_090--Hb_006157_020 Hb_004429_100 Hb_004429_100 Hb_000271_090--Hb_004429_100 Hb_031284_040 Hb_031284_040 Hb_000271_090--Hb_031284_040 Hb_000084_120 Hb_000084_120 Hb_000271_090--Hb_000084_120 Hb_000083_160 Hb_000083_160 Hb_000271_090--Hb_000083_160 Hb_000271_090--Hb_033834_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.21358 5.02674 4.05304 4.7483 11.4372 20.5185
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.14192 5.16324 3.87926 15.5554 8.65246

CAGE analysis