Hb_000072_020

Information

Type -
Description -
Location Contig72: 21503-30018
Sequence    

Annotation

kegg
ID tcc:TCM_030461
description C2 calcium/lipid-binding and GRAM domain containing protein
nr
ID XP_012074818.1
description PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
swissprot
ID Q9ZVT9
description C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4
trembl
ID A0A067KHC6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55573: 24828-27566 , PASA_asmbl_55574: 24828-26945
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000072_020 0.0 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
2 Hb_033363_010 0.0650845397 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
3 Hb_000227_320 0.081529278 - - unnamed protein product [Vitis vinifera]
4 Hb_003964_110 0.0938754967 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
5 Hb_002235_310 0.0953683836 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
6 Hb_000805_190 0.0965155352 transcription factor TF Family: GRAS PREDICTED: uncharacterized protein LOC103323607 [Prunus mume]
7 Hb_000133_090 0.0989560494 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
8 Hb_000649_120 0.1005091394 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_000111_370 0.1060581944 - - PREDICTED: cation/H(+) antiporter 2-like [Jatropha curcas]
10 Hb_000059_130 0.1065398173 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
11 Hb_000056_280 0.1090690276 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
12 Hb_005504_030 0.110280595 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Pyrus x bretschneideri]
13 Hb_000220_080 0.1103719797 - - kinase, putative [Ricinus communis]
14 Hb_000009_140 0.1118758631 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
15 Hb_006949_060 0.1131895348 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
16 Hb_132840_030 0.1134847424 transcription factor TF Family: MYB-related lhy1 [Populus tremula]
17 Hb_009372_020 0.113682245 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
18 Hb_006794_020 0.1154980617 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
19 Hb_000665_260 0.1158290592 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]
20 Hb_000271_120 0.1164932891 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]

Gene co-expression network

sample Hb_000072_020 Hb_000072_020 Hb_033363_010 Hb_033363_010 Hb_000072_020--Hb_033363_010 Hb_000227_320 Hb_000227_320 Hb_000072_020--Hb_000227_320 Hb_003964_110 Hb_003964_110 Hb_000072_020--Hb_003964_110 Hb_002235_310 Hb_002235_310 Hb_000072_020--Hb_002235_310 Hb_000805_190 Hb_000805_190 Hb_000072_020--Hb_000805_190 Hb_000133_090 Hb_000133_090 Hb_000072_020--Hb_000133_090 Hb_033363_010--Hb_000227_320 Hb_000009_140 Hb_000009_140 Hb_033363_010--Hb_000009_140 Hb_000111_370 Hb_000111_370 Hb_033363_010--Hb_000111_370 Hb_009372_020 Hb_009372_020 Hb_033363_010--Hb_009372_020 Hb_005504_030 Hb_005504_030 Hb_033363_010--Hb_005504_030 Hb_000227_320--Hb_003964_110 Hb_000665_260 Hb_000665_260 Hb_000227_320--Hb_000665_260 Hb_000950_040 Hb_000950_040 Hb_000227_320--Hb_000950_040 Hb_006949_060 Hb_006949_060 Hb_000227_320--Hb_006949_060 Hb_158845_060 Hb_158845_060 Hb_003964_110--Hb_158845_060 Hb_008165_020 Hb_008165_020 Hb_003964_110--Hb_008165_020 Hb_000331_100 Hb_000331_100 Hb_003964_110--Hb_000331_100 Hb_001414_010 Hb_001414_010 Hb_003964_110--Hb_001414_010 Hb_003964_110--Hb_000665_260 Hb_000866_110 Hb_000866_110 Hb_002235_310--Hb_000866_110 Hb_000205_250 Hb_000205_250 Hb_002235_310--Hb_000205_250 Hb_000125_180 Hb_000125_180 Hb_002235_310--Hb_000125_180 Hb_000649_120 Hb_000649_120 Hb_002235_310--Hb_000649_120 Hb_011925_020 Hb_011925_020 Hb_002235_310--Hb_011925_020 Hb_000056_280 Hb_000056_280 Hb_000805_190--Hb_000056_280 Hb_000059_130 Hb_000059_130 Hb_000805_190--Hb_000059_130 Hb_000805_190--Hb_002235_310 Hb_000110_300 Hb_000110_300 Hb_000805_190--Hb_000110_300 Hb_000805_190--Hb_033363_010 Hb_000243_400 Hb_000243_400 Hb_000133_090--Hb_000243_400 Hb_000413_250 Hb_000413_250 Hb_000133_090--Hb_000413_250 Hb_000133_090--Hb_000331_100 Hb_006794_020 Hb_006794_020 Hb_000133_090--Hb_006794_020 Hb_000133_090--Hb_003964_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.46913 9.72858 5.34749 7.20261 1.38738 1.74126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.02819 0.753079 1.72454 7.74371 4.99984

CAGE analysis