Hb_000072_040

Information

Type -
Description -
Location Contig72: 39270-42895
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000072_040 0.0 - - -
2 Hb_004228_040 0.2540873435 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
3 Hb_001496_020 0.269843487 - - putative WRKY transcription factor 19 -like protein [Gossypium arboreum]
4 Hb_133191_010 0.2709308355 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
5 Hb_016834_010 0.2752473243 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
6 Hb_014988_030 0.284420041 - - hypothetical protein VITISV_006810 [Vitis vinifera]
7 Hb_031474_020 0.2854170453 - - -
8 Hb_033286_020 0.2885837121 - - -
9 Hb_000832_350 0.2946439745 - - Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]
10 Hb_001511_230 0.3028351729 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
11 Hb_001496_140 0.3078587098 - - -
12 Hb_108557_010 0.3100730059 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
13 Hb_157029_010 0.3132287625 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
14 Hb_001652_040 0.3137920912 - - PREDICTED: uncharacterized protein LOC103341683 [Prunus mume]
15 Hb_003297_040 0.3153209518 - - Disease resistance protein RPM1, putative [Ricinus communis]
16 Hb_086993_010 0.321035512 - - -
17 Hb_001965_020 0.3229497459 - - hypothetical protein B456_013G048700 [Gossypium raimondii]
18 Hb_002888_080 0.3297667895 - - PREDICTED: uncharacterized protein LOC104120414 [Nicotiana tomentosiformis]
19 Hb_002123_030 0.3297995961 - - hypothetical protein VITISV_003767 [Vitis vinifera]
20 Hb_020411_010 0.3326540704 - - phosphoprotein phosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000072_040 Hb_000072_040 Hb_004228_040 Hb_004228_040 Hb_000072_040--Hb_004228_040 Hb_001496_020 Hb_001496_020 Hb_000072_040--Hb_001496_020 Hb_133191_010 Hb_133191_010 Hb_000072_040--Hb_133191_010 Hb_016834_010 Hb_016834_010 Hb_000072_040--Hb_016834_010 Hb_014988_030 Hb_014988_030 Hb_000072_040--Hb_014988_030 Hb_031474_020 Hb_031474_020 Hb_000072_040--Hb_031474_020 Hb_001652_040 Hb_001652_040 Hb_004228_040--Hb_001652_040 Hb_108557_010 Hb_108557_010 Hb_004228_040--Hb_108557_010 Hb_002888_080 Hb_002888_080 Hb_004228_040--Hb_002888_080 Hb_157029_010 Hb_157029_010 Hb_004228_040--Hb_157029_010 Hb_001225_060 Hb_001225_060 Hb_004228_040--Hb_001225_060 Hb_033286_020 Hb_033286_020 Hb_004228_040--Hb_033286_020 Hb_003297_040 Hb_003297_040 Hb_001496_020--Hb_003297_040 Hb_006856_020 Hb_006856_020 Hb_001496_020--Hb_006856_020 Hb_002003_120 Hb_002003_120 Hb_001496_020--Hb_002003_120 Hb_000832_350 Hb_000832_350 Hb_001496_020--Hb_000832_350 Hb_001496_020--Hb_033286_020 Hb_133191_010--Hb_014988_030 Hb_086993_010 Hb_086993_010 Hb_133191_010--Hb_086993_010 Hb_051731_010 Hb_051731_010 Hb_133191_010--Hb_051731_010 Hb_012253_020 Hb_012253_020 Hb_133191_010--Hb_012253_020 Hb_002090_010 Hb_002090_010 Hb_133191_010--Hb_002090_010 Hb_002123_030 Hb_002123_030 Hb_133191_010--Hb_002123_030 Hb_020411_010 Hb_020411_010 Hb_016834_010--Hb_020411_010 Hb_002456_020 Hb_002456_020 Hb_016834_010--Hb_002456_020 Hb_001496_140 Hb_001496_140 Hb_016834_010--Hb_001496_140 Hb_092650_010 Hb_092650_010 Hb_016834_010--Hb_092650_010 Hb_002260_260 Hb_002260_260 Hb_016834_010--Hb_002260_260 Hb_014988_030--Hb_086993_010 Hb_014988_030--Hb_012253_020 Hb_014988_030--Hb_051731_010 Hb_014988_030--Hb_002123_030 Hb_014988_030--Hb_002090_010 Hb_031474_020--Hb_002003_120 Hb_142051_010 Hb_142051_010 Hb_031474_020--Hb_142051_010 Hb_031474_020--Hb_003297_040 Hb_031474_020--Hb_108557_010 Hb_008489_010 Hb_008489_010 Hb_031474_020--Hb_008489_010 Hb_000832_340 Hb_000832_340 Hb_031474_020--Hb_000832_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0577417 0 0.0748645 0.182736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.290703 0.246791

CAGE analysis