Hb_000072_070

Information

Type rubber biosynthesis
Description Gene Name: Farnesyl diphosphate synthase
Location Contig72: 131400-136605
Sequence    

Annotation

kegg
ID pop:POPTR_0006s00530g
description POPTRDRAFT_560081; farnesyl-pyrophosphate synthetase fps2 family protein
nr
ID AAM98379.1
description farnesyl diphosphate synthase [Hevea brasiliensis]
swissprot
ID P49351
description Farnesyl pyrophosphate synthase 1 OS=Lupinus albus GN=FPS1 PE=2 SV=1
trembl
ID Q8L7F4
description Farnesyl diphosphate synthase OS=Hevea brasiliensis GN=FDP PE=2 SV=1
Gene Ontology
ID GO:0005737
description farnesyl diphosphate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55576: 131407-136474
cDNA
(Sanger)
(ID:Location)		 029_J04.ab1: 134243-136335

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000072_070 0.0 rubber biosynthesis Gene Name: Farnesyl diphosphate synthase farnesyl diphosphate synthase [Hevea brasiliensis]
2 Hb_011316_100 0.1041412916 - - PREDICTED: glycosyltransferase family 64 protein C4-like [Jatropha curcas]
3 Hb_000189_310 0.1223968975 - - PREDICTED: serine/threonine-protein kinase Nek1 isoform X1 [Jatropha curcas]
4 Hb_004007_160 0.1318340262 - - PREDICTED: formin-like protein 6 [Jatropha curcas]
5 Hb_008062_040 0.1318367537 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
6 Hb_001085_050 0.1329911007 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
7 Hb_000575_030 0.1330914825 - - unnamed protein product [Vitis vinifera]
8 Hb_000317_490 0.1335775104 - - Gibberellin receptor GID1, putative [Ricinus communis]
9 Hb_004705_040 0.1339305292 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
10 Hb_000733_070 0.1414418418 - - PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]
11 Hb_007479_050 0.1458263539 - - PREDICTED: uncharacterized protein LOC105649412 [Jatropha curcas]
12 Hb_001811_140 0.146277466 - - hypothetical protein POPTR_0007s03140g [Populus trichocarpa]
13 Hb_000003_600 0.1478932274 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 1 [Jatropha curcas]
14 Hb_000956_130 0.1483618128 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
15 Hb_000390_170 0.1490659683 - - PREDICTED: V-type proton ATPase subunit H [Jatropha curcas]
16 Hb_028358_010 0.1499837516 - - PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]
17 Hb_002188_130 0.1511030589 - - PREDICTED: uncharacterized protein LOC105650815 isoform X2 [Jatropha curcas]
18 Hb_000421_180 0.1535126494 - - ATP binding protein, putative [Ricinus communis]
19 Hb_001960_040 0.1543838865 - - PREDICTED: CTP synthase [Jatropha curcas]
20 Hb_012725_070 0.1549896938 - - PREDICTED: uncharacterized protein LOC105636534 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000072_070 Hb_000072_070 Hb_011316_100 Hb_011316_100 Hb_000072_070--Hb_011316_100 Hb_000189_310 Hb_000189_310 Hb_000072_070--Hb_000189_310 Hb_004007_160 Hb_004007_160 Hb_000072_070--Hb_004007_160 Hb_008062_040 Hb_008062_040 Hb_000072_070--Hb_008062_040 Hb_001085_050 Hb_001085_050 Hb_000072_070--Hb_001085_050 Hb_000575_030 Hb_000575_030 Hb_000072_070--Hb_000575_030 Hb_035273_030 Hb_035273_030 Hb_011316_100--Hb_035273_030 Hb_007479_050 Hb_007479_050 Hb_011316_100--Hb_007479_050 Hb_002183_070 Hb_002183_070 Hb_011316_100--Hb_002183_070 Hb_001053_180 Hb_001053_180 Hb_011316_100--Hb_001053_180 Hb_001328_040 Hb_001328_040 Hb_011316_100--Hb_001328_040 Hb_001616_080 Hb_001616_080 Hb_000189_310--Hb_001616_080 Hb_003069_010 Hb_003069_010 Hb_000189_310--Hb_003069_010 Hb_012725_070 Hb_012725_070 Hb_000189_310--Hb_012725_070 Hb_011013_010 Hb_011013_010 Hb_000189_310--Hb_011013_010 Hb_000189_310--Hb_011316_100 Hb_004705_040 Hb_004705_040 Hb_004007_160--Hb_004705_040 Hb_000554_010 Hb_000554_010 Hb_004007_160--Hb_000554_010 Hb_000956_130 Hb_000956_130 Hb_004007_160--Hb_000956_130 Hb_000649_050 Hb_000649_050 Hb_004007_160--Hb_000649_050 Hb_028358_010 Hb_028358_010 Hb_004007_160--Hb_028358_010 Hb_000299_040 Hb_000299_040 Hb_004007_160--Hb_000299_040 Hb_008062_040--Hb_001085_050 Hb_008062_040--Hb_000575_030 Hb_000317_490 Hb_000317_490 Hb_008062_040--Hb_000317_490 Hb_008062_040--Hb_011316_100 Hb_000331_250 Hb_000331_250 Hb_008062_040--Hb_000331_250 Hb_000003_600 Hb_000003_600 Hb_001085_050--Hb_000003_600 Hb_007313_090 Hb_007313_090 Hb_001085_050--Hb_007313_090 Hb_001085_050--Hb_000575_030 Hb_003638_130 Hb_003638_130 Hb_001085_050--Hb_003638_130 Hb_003607_050 Hb_003607_050 Hb_000575_030--Hb_003607_050 Hb_000575_030--Hb_000317_490 Hb_004195_270 Hb_004195_270 Hb_000575_030--Hb_004195_270 Hb_000575_030--Hb_011316_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
139.406 11.2584 73.3792 41.3166 46.3609 43.9463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
115.002 46.3832 50.2617 22.0281 37.798

CAGE analysis