Hb_000072_080

Information

Type -
Description -
Location Contig72: 174944-176254
Sequence    

Annotation

kegg
ID cic:CICLE_v10016360mg
description hypothetical protein
nr
ID XP_012066895.1
description PREDICTED: probable ribosomal protein S11, mitochondrial [Jatropha curcas]
swissprot
ID Q8VZT8
description Probable ribosomal protein S11, mitochondrial OS=Arabidopsis thaliana GN=NFD3 PE=2 SV=1
trembl
ID A0A067L1N0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01641 PE=3 SV=1
Gene Ontology
ID GO:0005840
description ribosomal protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55577: 174895-176661
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000072_080 0.0 - - PREDICTED: probable ribosomal protein S11, mitochondrial [Jatropha curcas]
2 Hb_012753_160 0.0620838002 - - ara4-interacting protein, putative [Ricinus communis]
3 Hb_002235_280 0.0673915168 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]
4 Hb_138585_060 0.0789104126 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
5 Hb_021409_030 0.0814807291 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
6 Hb_001143_080 0.0816310994 - - PREDICTED: F-box protein 7 [Jatropha curcas]
7 Hb_000120_680 0.0840250183 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
8 Hb_002056_060 0.084094864 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
9 Hb_000230_510 0.0857338771 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
10 Hb_000617_150 0.0869722783 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
11 Hb_012675_060 0.0877246201 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
12 Hb_004993_050 0.0890725473 - - -
13 Hb_001140_060 0.0895417892 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
14 Hb_001923_010 0.0910612562 - - PREDICTED: outer envelope protein 80, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_017948_010 0.0913614917 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
16 Hb_003994_040 0.0918098278 - - -
17 Hb_000479_010 0.0928079722 - - PREDICTED: 40S ribosomal protein S19-3-like [Eucalyptus grandis]
18 Hb_001141_030 0.0932840112 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
19 Hb_006117_070 0.0942265523 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
20 Hb_003455_040 0.0943059086 - - hypothetical protein JCGZ_17270 [Jatropha curcas]

Gene co-expression network

sample Hb_000072_080 Hb_000072_080 Hb_012753_160 Hb_012753_160 Hb_000072_080--Hb_012753_160 Hb_002235_280 Hb_002235_280 Hb_000072_080--Hb_002235_280 Hb_138585_060 Hb_138585_060 Hb_000072_080--Hb_138585_060 Hb_021409_030 Hb_021409_030 Hb_000072_080--Hb_021409_030 Hb_001143_080 Hb_001143_080 Hb_000072_080--Hb_001143_080 Hb_000120_680 Hb_000120_680 Hb_000072_080--Hb_000120_680 Hb_012675_060 Hb_012675_060 Hb_012753_160--Hb_012675_060 Hb_001140_060 Hb_001140_060 Hb_012753_160--Hb_001140_060 Hb_001998_050 Hb_001998_050 Hb_012753_160--Hb_001998_050 Hb_003455_040 Hb_003455_040 Hb_012753_160--Hb_003455_040 Hb_000574_480 Hb_000574_480 Hb_012753_160--Hb_000574_480 Hb_019263_020 Hb_019263_020 Hb_002235_280--Hb_019263_020 Hb_000617_150 Hb_000617_150 Hb_002235_280--Hb_000617_150 Hb_008695_100 Hb_008695_100 Hb_002235_280--Hb_008695_100 Hb_001140_220 Hb_001140_220 Hb_002235_280--Hb_001140_220 Hb_013607_040 Hb_013607_040 Hb_002235_280--Hb_013607_040 Hb_138585_060--Hb_021409_030 Hb_000258_170 Hb_000258_170 Hb_138585_060--Hb_000258_170 Hb_001141_030 Hb_001141_030 Hb_138585_060--Hb_001141_030 Hb_007100_030 Hb_007100_030 Hb_138585_060--Hb_007100_030 Hb_000479_010 Hb_000479_010 Hb_138585_060--Hb_000479_010 Hb_129204_030 Hb_129204_030 Hb_021409_030--Hb_129204_030 Hb_004375_140 Hb_004375_140 Hb_021409_030--Hb_004375_140 Hb_000608_370 Hb_000608_370 Hb_021409_030--Hb_000608_370 Hb_000240_090 Hb_000240_090 Hb_021409_030--Hb_000240_090 Hb_021409_030--Hb_012753_160 Hb_001638_020 Hb_001638_020 Hb_001143_080--Hb_001638_020 Hb_001143_080--Hb_001141_030 Hb_001143_080--Hb_001998_050 Hb_001269_170 Hb_001269_170 Hb_001143_080--Hb_001269_170 Hb_000227_230 Hb_000227_230 Hb_001143_080--Hb_000227_230 Hb_000120_680--Hb_000617_150 Hb_000120_680--Hb_000240_090 Hb_004635_100 Hb_004635_100 Hb_000120_680--Hb_004635_100 Hb_000563_250 Hb_000563_250 Hb_000120_680--Hb_000563_250 Hb_001699_130 Hb_001699_130 Hb_000120_680--Hb_001699_130 Hb_000622_090 Hb_000622_090 Hb_000120_680--Hb_000622_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.914 16.8109 11.4321 20.7526 30.0962 32.6673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.3944 96.3363 79.5171 22.8491 23.9578

CAGE analysis