Hb_000072_140

Information

Type -
Description -
Location Contig72: 274925-284573
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55583: 275821-276600
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000072_140 0.0 - - -
2 Hb_000088_200 0.0686052469 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
3 Hb_000617_220 0.0740438976 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
4 Hb_011848_010 0.0802627191 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
5 Hb_004044_020 0.0820224173 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
6 Hb_003091_010 0.0829843176 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
7 Hb_004525_100 0.0838116886 - - hypothetical protein JCGZ_18418 [Jatropha curcas]
8 Hb_000803_110 0.0843002661 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
9 Hb_000175_390 0.0892645229 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
10 Hb_000156_140 0.0919777773 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
11 Hb_000808_250 0.0919994754 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
12 Hb_003050_200 0.0920353499 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
13 Hb_003126_040 0.0938051329 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006623_020 0.0943819799 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
15 Hb_000290_020 0.0957133023 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
16 Hb_000359_330 0.0962558148 - - conserved hypothetical protein [Ricinus communis]
17 Hb_178968_100 0.0989107497 - - PREDICTED: putative glucose-6-phosphate 1-epimerase isoform X1 [Populus euphratica]
18 Hb_000014_170 0.100535006 - - hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
19 Hb_001047_100 0.1022039066 - - 40S ribosomal protein S18, putative [Ricinus communis]
20 Hb_003044_100 0.1042757024 - - hypothetical protein F383_08446 [Gossypium arboreum]

Gene co-expression network

sample Hb_000072_140 Hb_000072_140 Hb_000088_200 Hb_000088_200 Hb_000072_140--Hb_000088_200 Hb_000617_220 Hb_000617_220 Hb_000072_140--Hb_000617_220 Hb_011848_010 Hb_011848_010 Hb_000072_140--Hb_011848_010 Hb_004044_020 Hb_004044_020 Hb_000072_140--Hb_004044_020 Hb_003091_010 Hb_003091_010 Hb_000072_140--Hb_003091_010 Hb_004525_100 Hb_004525_100 Hb_000072_140--Hb_004525_100 Hb_000088_200--Hb_004044_020 Hb_000088_200--Hb_004525_100 Hb_000236_280 Hb_000236_280 Hb_000088_200--Hb_000236_280 Hb_178968_100 Hb_178968_100 Hb_000088_200--Hb_178968_100 Hb_000175_390 Hb_000175_390 Hb_000088_200--Hb_000175_390 Hb_000617_220--Hb_003091_010 Hb_000617_220--Hb_011848_010 Hb_001894_030 Hb_001894_030 Hb_000617_220--Hb_001894_030 Hb_006623_020 Hb_006623_020 Hb_000617_220--Hb_006623_020 Hb_000290_020 Hb_000290_020 Hb_000617_220--Hb_000290_020 Hb_011848_010--Hb_003091_010 Hb_000803_110 Hb_000803_110 Hb_011848_010--Hb_000803_110 Hb_004450_060 Hb_004450_060 Hb_011848_010--Hb_004450_060 Hb_000359_330 Hb_000359_330 Hb_011848_010--Hb_000359_330 Hb_009222_010 Hb_009222_010 Hb_011848_010--Hb_009222_010 Hb_000684_420 Hb_000684_420 Hb_004044_020--Hb_000684_420 Hb_004044_020--Hb_000236_280 Hb_031939_010 Hb_031939_010 Hb_004044_020--Hb_031939_010 Hb_012305_070 Hb_012305_070 Hb_004044_020--Hb_012305_070 Hb_004044_020--Hb_004525_100 Hb_004701_030 Hb_004701_030 Hb_003091_010--Hb_004701_030 Hb_003091_010--Hb_000359_330 Hb_003091_010--Hb_004450_060 Hb_001754_240 Hb_001754_240 Hb_003091_010--Hb_001754_240 Hb_004525_100--Hb_000236_280 Hb_004525_100--Hb_000617_220 Hb_000976_270 Hb_000976_270 Hb_004525_100--Hb_000976_270 Hb_003126_040 Hb_003126_040 Hb_004525_100--Hb_003126_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.90206 2.03274 2.54245 1.54201 6.23603 6.24217
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.90178 4.82378 2.08052 1.09209 1.07736

CAGE analysis