Hb_000072_160

Information

Type -
Description -
Location Contig72: 300401-302955
Sequence    

Annotation

kegg
ID pop:POPTR_0017s14250g
description hypothetical protein
nr
ID AGC51786.1
description proline oxidase [Manihot esculenta]
swissprot
ID Q6NKX1
description Proline dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=POX2 PE=2 SV=1
trembl
ID V9M5A2
description Proline oxidase OS=Manihot esculenta GN=ProDH PE=2 SV=1
Gene Ontology
ID GO:0004657
description proline dehydrogenase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55585: 300574-302386
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000072_160 0.0 - - proline oxidase [Manihot esculenta]
2 Hb_002272_070 0.0668983077 - - PREDICTED: keratin, type I cytoskeletal 9 [Jatropha curcas]
3 Hb_002329_030 0.0760134213 - - PREDICTED: pleiotropic drug resistance protein 2-like isoform X1 [Jatropha curcas]
4 Hb_006615_190 0.0789000473 - - UDP-glycosyltransferase 1 [Linum usitatissimum]
5 Hb_145139_010 0.0793055104 - - PREDICTED: sugar transporter ERD6-like 5 isoform X1 [Vitis vinifera]
6 Hb_002968_010 0.0848632039 - - PREDICTED: pectinesterase [Jatropha curcas]
7 Hb_014361_130 0.0893525209 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
8 Hb_007237_090 0.0961698543 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011470_010 0.1040716743 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
10 Hb_009786_010 0.1080441479 - - Phosphoprotein phosphatase [Theobroma cacao]
11 Hb_000172_010 0.1103596057 - - PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Populus euphratica]
12 Hb_084127_010 0.1117383992 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_000007_210 0.1171890946 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
14 Hb_002239_020 0.1179265874 - - MLO, putative [Theobroma cacao]
15 Hb_002475_010 0.1238242509 - - hypothetical protein JCGZ_22530 [Jatropha curcas]
16 Hb_000579_220 0.1250180114 - - transcription factor, putative [Ricinus communis]
17 Hb_002097_210 0.1265993722 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004122_020 0.1272814594 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
19 Hb_126466_010 0.1273366622 - - alcohol dehydrogenase, putative [Ricinus communis]
20 Hb_000656_370 0.1300523551 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000072_160 Hb_000072_160 Hb_002272_070 Hb_002272_070 Hb_000072_160--Hb_002272_070 Hb_002329_030 Hb_002329_030 Hb_000072_160--Hb_002329_030 Hb_006615_190 Hb_006615_190 Hb_000072_160--Hb_006615_190 Hb_145139_010 Hb_145139_010 Hb_000072_160--Hb_145139_010 Hb_002968_010 Hb_002968_010 Hb_000072_160--Hb_002968_010 Hb_014361_130 Hb_014361_130 Hb_000072_160--Hb_014361_130 Hb_002272_070--Hb_002329_030 Hb_011470_010 Hb_011470_010 Hb_002272_070--Hb_011470_010 Hb_126466_010 Hb_126466_010 Hb_002272_070--Hb_126466_010 Hb_002272_070--Hb_006615_190 Hb_002272_070--Hb_145139_010 Hb_000007_210 Hb_000007_210 Hb_002329_030--Hb_000007_210 Hb_002329_030--Hb_014361_130 Hb_002329_030--Hb_006615_190 Hb_084127_010 Hb_084127_010 Hb_002329_030--Hb_084127_010 Hb_007237_090 Hb_007237_090 Hb_006615_190--Hb_007237_090 Hb_006615_190--Hb_084127_010 Hb_000579_220 Hb_000579_220 Hb_006615_190--Hb_000579_220 Hb_000172_010 Hb_000172_010 Hb_006615_190--Hb_000172_010 Hb_145139_010--Hb_002968_010 Hb_000656_370 Hb_000656_370 Hb_145139_010--Hb_000656_370 Hb_002097_210 Hb_002097_210 Hb_145139_010--Hb_002097_210 Hb_002475_010 Hb_002475_010 Hb_145139_010--Hb_002475_010 Hb_002968_010--Hb_000656_370 Hb_000101_140 Hb_000101_140 Hb_002968_010--Hb_000101_140 Hb_004122_020 Hb_004122_020 Hb_002968_010--Hb_004122_020 Hb_002968_010--Hb_002475_010 Hb_014361_130--Hb_002272_070 Hb_014361_130--Hb_145139_010 Hb_009247_030 Hb_009247_030 Hb_014361_130--Hb_009247_030 Hb_066320_010 Hb_066320_010 Hb_014361_130--Hb_066320_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.070167 82.1036 5.41446 34.3575 0.0827219 0.114102
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0557795 0.0877709 0.12412 23.4521 20.0007

CAGE analysis