Hb_000072_200

Information

Type -
Description -
Location Contig72: 337358-342035
Sequence    

Annotation

kegg
ID rcu:RCOM_0596600
description hypothetical protein
nr
ID XP_012088122.1
description PREDICTED: myb-like protein X [Jatropha curcas]
swissprot
ID O94683
description Ribosomal RNA-processing protein 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp7 PE=3 SV=2
trembl
ID A0A067JNH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25639 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55596: 337409-340074 , PASA_asmbl_55598: 340082-342015 , PASA_asmbl_55599: 340809-341089 , PASA_asmbl_55600: 342212-342495
cDNA
(Sanger)
(ID:Location)		 037_F22.ab1: 340082-342015

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000072_200 0.0 - - PREDICTED: myb-like protein X [Jatropha curcas]
2 Hb_002232_060 0.0898928647 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
3 Hb_001979_020 0.0968644865 - - hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]
4 Hb_000465_070 0.0989755798 - - PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Jatropha curcas]
5 Hb_000107_150 0.0995942866 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
6 Hb_000035_480 0.1080193356 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
7 Hb_000457_290 0.108932455 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
8 Hb_003106_100 0.1129088625 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
9 Hb_015183_060 0.1187765463 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
10 Hb_100886_010 0.120884522 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
11 Hb_002631_180 0.1246373904 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
12 Hb_007747_050 0.1248314822 - - Peptidyl-prolyl cis-trans isomerase cypE, putative [Ricinus communis]
13 Hb_000136_350 0.1257641714 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
14 Hb_000419_020 0.1262825437 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000016_080 0.1272515778 - - PREDICTED: uncharacterized protein LOC105648533 [Jatropha curcas]
16 Hb_140627_010 0.1284045918 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002876_020 0.1284787053 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
18 Hb_011457_050 0.1288225585 - - PREDICTED: TP53-regulating kinase [Jatropha curcas]
19 Hb_001728_060 0.1291899204 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
20 Hb_002872_050 0.1295146953 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000072_200 Hb_000072_200 Hb_002232_060 Hb_002232_060 Hb_000072_200--Hb_002232_060 Hb_001979_020 Hb_001979_020 Hb_000072_200--Hb_001979_020 Hb_000465_070 Hb_000465_070 Hb_000072_200--Hb_000465_070 Hb_000107_150 Hb_000107_150 Hb_000072_200--Hb_000107_150 Hb_000035_480 Hb_000035_480 Hb_000072_200--Hb_000035_480 Hb_000457_290 Hb_000457_290 Hb_000072_200--Hb_000457_290 Hb_002232_060--Hb_001979_020 Hb_005843_140 Hb_005843_140 Hb_002232_060--Hb_005843_140 Hb_003020_150 Hb_003020_150 Hb_002232_060--Hb_003020_150 Hb_002232_060--Hb_000465_070 Hb_006198_070 Hb_006198_070 Hb_002232_060--Hb_006198_070 Hb_001979_020--Hb_003020_150 Hb_005054_260 Hb_005054_260 Hb_001979_020--Hb_005054_260 Hb_003880_030 Hb_003880_030 Hb_001979_020--Hb_003880_030 Hb_000384_120 Hb_000384_120 Hb_001979_020--Hb_000384_120 Hb_000465_070--Hb_000035_480 Hb_000465_070--Hb_000457_290 Hb_000403_070 Hb_000403_070 Hb_000465_070--Hb_000403_070 Hb_100886_010 Hb_100886_010 Hb_000465_070--Hb_100886_010 Hb_003106_100 Hb_003106_100 Hb_000465_070--Hb_003106_100 Hb_007827_010 Hb_007827_010 Hb_000107_150--Hb_007827_010 Hb_001240_010 Hb_001240_010 Hb_000107_150--Hb_001240_010 Hb_002872_050 Hb_002872_050 Hb_000107_150--Hb_002872_050 Hb_001728_060 Hb_001728_060 Hb_000107_150--Hb_001728_060 Hb_003020_260 Hb_003020_260 Hb_000107_150--Hb_003020_260 Hb_014720_110 Hb_014720_110 Hb_000107_150--Hb_014720_110 Hb_140627_010 Hb_140627_010 Hb_000035_480--Hb_140627_010 Hb_000035_480--Hb_000457_290 Hb_000035_480--Hb_000403_070 Hb_001892_070 Hb_001892_070 Hb_000035_480--Hb_001892_070 Hb_000392_550 Hb_000392_550 Hb_000035_480--Hb_000392_550 Hb_000457_290--Hb_140627_010 Hb_000457_290--Hb_000403_070 Hb_000457_290--Hb_001892_070 Hb_000457_290--Hb_002232_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.28332 4.94148 9.99063 12.1614 4.63238 7.11873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.768 37.2749 13.8014 22.0829 21.7253

CAGE analysis