Hb_000072_210

Information

Type -
Description -
Location Contig72: 342270-343513
Sequence    

Annotation

kegg
ID rcu:RCOM_0447170
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012088123.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Jatropha curcas]
swissprot
ID Q9FKR3
description Pentatricopeptide repeat-containing protein At5g38730 OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1
trembl
ID B9T3S4
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0447170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000072_210 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Jatropha curcas]
2 Hb_010560_030 0.1282607953 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]
3 Hb_000327_380 0.1319589911 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
4 Hb_000923_090 0.134297142 - - -
5 Hb_000390_140 0.1350349736 - - PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
6 Hb_004052_050 0.1442666228 - - PREDICTED: uncharacterized protein LOC105640640 [Jatropha curcas]
7 Hb_001123_210 0.1445596867 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
8 Hb_008695_050 0.1469328781 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000009_290 0.1503935897 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
10 Hb_004162_210 0.153697296 - - Cyclin-dependent kinases regulatory subunit, putative [Ricinus communis]
11 Hb_002304_160 0.1565550227 - - PREDICTED: nudix hydrolase 15, mitochondrial-like isoform X1 [Jatropha curcas]
12 Hb_008226_080 0.157047948 - - Protein LRP16, putative [Ricinus communis]
13 Hb_001247_100 0.1585603836 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
14 Hb_148209_010 0.1587574741 - - RAS-related GTP-binding family protein [Populus trichocarpa]
15 Hb_000207_400 0.1592207364 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
16 Hb_003605_160 0.1594282145 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
17 Hb_002681_200 0.1599791444 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
18 Hb_000030_200 0.161500256 - - PREDICTED: early nodulin-93-like [Populus euphratica]
19 Hb_007192_100 0.1618523714 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
20 Hb_000362_190 0.1627879906 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]

Gene co-expression network

sample Hb_000072_210 Hb_000072_210 Hb_010560_030 Hb_010560_030 Hb_000072_210--Hb_010560_030 Hb_000327_380 Hb_000327_380 Hb_000072_210--Hb_000327_380 Hb_000923_090 Hb_000923_090 Hb_000072_210--Hb_000923_090 Hb_000390_140 Hb_000390_140 Hb_000072_210--Hb_000390_140 Hb_004052_050 Hb_004052_050 Hb_000072_210--Hb_004052_050 Hb_001123_210 Hb_001123_210 Hb_000072_210--Hb_001123_210 Hb_001053_140 Hb_001053_140 Hb_010560_030--Hb_001053_140 Hb_010560_030--Hb_000327_380 Hb_000189_240 Hb_000189_240 Hb_010560_030--Hb_000189_240 Hb_000302_140 Hb_000302_140 Hb_010560_030--Hb_000302_140 Hb_002303_060 Hb_002303_060 Hb_010560_030--Hb_002303_060 Hb_000087_130 Hb_000087_130 Hb_010560_030--Hb_000087_130 Hb_000009_290 Hb_000009_290 Hb_000327_380--Hb_000009_290 Hb_000805_240 Hb_000805_240 Hb_000327_380--Hb_000805_240 Hb_000327_230 Hb_000327_230 Hb_000327_380--Hb_000327_230 Hb_003362_030 Hb_003362_030 Hb_000327_380--Hb_003362_030 Hb_000045_300 Hb_000045_300 Hb_000327_380--Hb_000045_300 Hb_000923_090--Hb_000390_140 Hb_004162_210 Hb_004162_210 Hb_000923_090--Hb_004162_210 Hb_008695_050 Hb_008695_050 Hb_000923_090--Hb_008695_050 Hb_004800_060 Hb_004800_060 Hb_000923_090--Hb_004800_060 Hb_002609_160 Hb_002609_160 Hb_000923_090--Hb_002609_160 Hb_007894_060 Hb_007894_060 Hb_000923_090--Hb_007894_060 Hb_000390_140--Hb_008695_050 Hb_000390_140--Hb_002609_160 Hb_002636_080 Hb_002636_080 Hb_000390_140--Hb_002636_080 Hb_004734_040 Hb_004734_040 Hb_000390_140--Hb_004734_040 Hb_009486_020 Hb_009486_020 Hb_004052_050--Hb_009486_020 Hb_018124_010 Hb_018124_010 Hb_004052_050--Hb_018124_010 Hb_004052_050--Hb_000805_240 Hb_001247_100 Hb_001247_100 Hb_004052_050--Hb_001247_100 Hb_152784_010 Hb_152784_010 Hb_004052_050--Hb_152784_010 Hb_007192_100 Hb_007192_100 Hb_004052_050--Hb_007192_100 Hb_010897_030 Hb_010897_030 Hb_001123_210--Hb_010897_030 Hb_002341_020 Hb_002341_020 Hb_001123_210--Hb_002341_020 Hb_002774_050 Hb_002774_050 Hb_001123_210--Hb_002774_050 Hb_001123_210--Hb_007192_100 Hb_001123_210--Hb_004052_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.214355 0.30822 0.357994 0.77663 0.0471383 0.255488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.16912 0.826773 0.47459 0.341238 0.174814

CAGE analysis