Hb_000072_250

Information

Type transcription factor
Description TF Family: Orphans
Location Contig72: 371302-373330
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55605: 372306-374610
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000072_250 0.0 transcription factor TF Family: Orphans -
2 Hb_000836_540 0.1256750472 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
3 Hb_000609_110 0.1261806808 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
4 Hb_000011_240 0.1270975749 - - PREDICTED: uncharacterized protein LOC105631316 [Jatropha curcas]
5 Hb_001828_120 0.1279361958 - - PREDICTED: uncharacterized protein LOC105140167 [Populus euphratica]
6 Hb_002056_100 0.1292802919 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
7 Hb_002686_240 0.1338755851 - - Thioredoxin, putative [Ricinus communis]
8 Hb_001252_230 0.1387577473 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
9 Hb_002265_010 0.139169785 - - ef-hand calcium binding protein, putative [Ricinus communis]
10 Hb_000603_190 0.1394736188 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
11 Hb_006569_040 0.1414809824 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
12 Hb_003529_140 0.1420487252 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
13 Hb_001558_060 0.1420624979 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X2 [Jatropha curcas]
14 Hb_000673_010 0.1429615471 - - PREDICTED: uncharacterized protein LOC105636554 isoform X1 [Jatropha curcas]
15 Hb_000806_030 0.1434869898 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
16 Hb_001635_210 0.144766238 - - PREDICTED: protein EARLY FLOWERING 3 isoform X1 [Jatropha curcas]
17 Hb_001409_060 0.1451565676 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
18 Hb_005883_020 0.1460277448 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic [Jatropha curcas]
19 Hb_000003_400 0.1475654186 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
20 Hb_000245_150 0.1487511741 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]

Gene co-expression network

sample Hb_000072_250 Hb_000072_250 Hb_000836_540 Hb_000836_540 Hb_000072_250--Hb_000836_540 Hb_000609_110 Hb_000609_110 Hb_000072_250--Hb_000609_110 Hb_000011_240 Hb_000011_240 Hb_000072_250--Hb_000011_240 Hb_001828_120 Hb_001828_120 Hb_000072_250--Hb_001828_120 Hb_002056_100 Hb_002056_100 Hb_000072_250--Hb_002056_100 Hb_002686_240 Hb_002686_240 Hb_000072_250--Hb_002686_240 Hb_000836_540--Hb_000609_110 Hb_005694_130 Hb_005694_130 Hb_000836_540--Hb_005694_130 Hb_001369_030 Hb_001369_030 Hb_000836_540--Hb_001369_030 Hb_003925_060 Hb_003925_060 Hb_000836_540--Hb_003925_060 Hb_000453_230 Hb_000453_230 Hb_000836_540--Hb_000453_230 Hb_000836_540--Hb_002056_100 Hb_000609_110--Hb_005694_130 Hb_027380_210 Hb_027380_210 Hb_000609_110--Hb_027380_210 Hb_003001_070 Hb_003001_070 Hb_000609_110--Hb_003001_070 Hb_003992_180 Hb_003992_180 Hb_000609_110--Hb_003992_180 Hb_000805_200 Hb_000805_200 Hb_000609_110--Hb_000805_200 Hb_000663_080 Hb_000663_080 Hb_000011_240--Hb_000663_080 Hb_006120_040 Hb_006120_040 Hb_000011_240--Hb_006120_040 Hb_001430_020 Hb_001430_020 Hb_000011_240--Hb_001430_020 Hb_000085_190 Hb_000085_190 Hb_000011_240--Hb_000085_190 Hb_102948_010 Hb_102948_010 Hb_000011_240--Hb_102948_010 Hb_000245_150 Hb_000245_150 Hb_000011_240--Hb_000245_150 Hb_003529_140 Hb_003529_140 Hb_001828_120--Hb_003529_140 Hb_000771_170 Hb_000771_170 Hb_001828_120--Hb_000771_170 Hb_005883_020 Hb_005883_020 Hb_001828_120--Hb_005883_020 Hb_002600_070 Hb_002600_070 Hb_001828_120--Hb_002600_070 Hb_007192_090 Hb_007192_090 Hb_001828_120--Hb_007192_090 Hb_002249_030 Hb_002249_030 Hb_001828_120--Hb_002249_030 Hb_000806_030 Hb_000806_030 Hb_002056_100--Hb_000806_030 Hb_000645_130 Hb_000645_130 Hb_002056_100--Hb_000645_130 Hb_000500_300 Hb_000500_300 Hb_002056_100--Hb_000500_300 Hb_009302_030 Hb_009302_030 Hb_002056_100--Hb_009302_030 Hb_004659_090 Hb_004659_090 Hb_002056_100--Hb_004659_090 Hb_000030_140 Hb_000030_140 Hb_002056_100--Hb_000030_140 Hb_000559_020 Hb_000559_020 Hb_002686_240--Hb_000559_020 Hb_007479_070 Hb_007479_070 Hb_002686_240--Hb_007479_070 Hb_001348_190 Hb_001348_190 Hb_002686_240--Hb_001348_190 Hb_010812_050 Hb_010812_050 Hb_002686_240--Hb_010812_050 Hb_001662_140 Hb_001662_140 Hb_002686_240--Hb_001662_140 Hb_000205_260 Hb_000205_260 Hb_002686_240--Hb_000205_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1487 21.6908 20.4957 4.18779 6.19971 7.7838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.59011 6.04678 3.977 3.96244 18.552

CAGE analysis