Hb_000072_320

Information

Type -
Description -
Location Contig72: 464882-465853
Sequence    

Annotation

kegg
ID cmo:103498560
description uncharacterized LOC103498560
nr
ID XP_012088084.1
description PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
swissprot
ID P0CH30
description E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1
trembl
ID A0A067JNE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25609 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55612: 464913-465950
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000072_320 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
2 Hb_000207_050 0.0549884286 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
3 Hb_000095_080 0.0714943042 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]
4 Hb_001016_120 0.0736914686 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
5 Hb_002169_040 0.0757275484 - - unknown [Populus trichocarpa]
6 Hb_029510_050 0.0765081937 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
7 Hb_001314_050 0.0767971793 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
8 Hb_001629_030 0.0783816403 - - PAP-specific phosphatase HAL2-like family protein [Populus trichocarpa]
9 Hb_003025_100 0.078617985 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
10 Hb_004109_080 0.0787368508 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
11 Hb_029879_070 0.0815727013 - - PREDICTED: phospholipase A I [Jatropha curcas]
12 Hb_001004_070 0.0823188001 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001828_150 0.082463363 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
14 Hb_001489_080 0.0825803428 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
15 Hb_005054_110 0.083402839 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
16 Hb_002026_150 0.083462287 transcription factor TF Family: SNF2 PREDICTED: DNA repair helicase XPB1 isoform X1 [Jatropha curcas]
17 Hb_012498_010 0.0839293639 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
18 Hb_002481_080 0.084100192 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
19 Hb_004567_090 0.0844188053 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
20 Hb_000254_090 0.0856797678 - - PREDICTED: la protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000072_320 Hb_000072_320 Hb_000207_050 Hb_000207_050 Hb_000072_320--Hb_000207_050 Hb_000095_080 Hb_000095_080 Hb_000072_320--Hb_000095_080 Hb_001016_120 Hb_001016_120 Hb_000072_320--Hb_001016_120 Hb_002169_040 Hb_002169_040 Hb_000072_320--Hb_002169_040 Hb_029510_050 Hb_029510_050 Hb_000072_320--Hb_029510_050 Hb_001314_050 Hb_001314_050 Hb_000072_320--Hb_001314_050 Hb_002044_150 Hb_002044_150 Hb_000207_050--Hb_002044_150 Hb_002169_050 Hb_002169_050 Hb_000207_050--Hb_002169_050 Hb_005269_070 Hb_005269_070 Hb_000207_050--Hb_005269_070 Hb_001489_080 Hb_001489_080 Hb_000207_050--Hb_001489_080 Hb_000207_050--Hb_029510_050 Hb_001999_310 Hb_001999_310 Hb_000095_080--Hb_001999_310 Hb_000069_210 Hb_000069_210 Hb_000095_080--Hb_000069_210 Hb_000095_080--Hb_001016_120 Hb_007416_090 Hb_007416_090 Hb_000095_080--Hb_007416_090 Hb_000656_010 Hb_000656_010 Hb_000095_080--Hb_000656_010 Hb_000116_270 Hb_000116_270 Hb_001016_120--Hb_000116_270 Hb_149985_010 Hb_149985_010 Hb_001016_120--Hb_149985_010 Hb_084646_010 Hb_084646_010 Hb_001016_120--Hb_084646_010 Hb_002481_080 Hb_002481_080 Hb_001016_120--Hb_002481_080 Hb_028227_070 Hb_028227_070 Hb_001016_120--Hb_028227_070 Hb_005054_110 Hb_005054_110 Hb_001016_120--Hb_005054_110 Hb_000985_030 Hb_000985_030 Hb_002169_040--Hb_000985_030 Hb_002169_040--Hb_005269_070 Hb_007676_080 Hb_007676_080 Hb_002169_040--Hb_007676_080 Hb_156279_020 Hb_156279_020 Hb_002169_040--Hb_156279_020 Hb_002169_040--Hb_001489_080 Hb_000003_230 Hb_000003_230 Hb_002169_040--Hb_000003_230 Hb_000254_090 Hb_000254_090 Hb_029510_050--Hb_000254_090 Hb_029879_070 Hb_029879_070 Hb_029510_050--Hb_029879_070 Hb_001357_020 Hb_001357_020 Hb_029510_050--Hb_001357_020 Hb_002518_260 Hb_002518_260 Hb_029510_050--Hb_002518_260 Hb_005686_090 Hb_005686_090 Hb_029510_050--Hb_005686_090 Hb_002685_210 Hb_002685_210 Hb_029510_050--Hb_002685_210 Hb_000392_430 Hb_000392_430 Hb_001314_050--Hb_000392_430 Hb_000111_320 Hb_000111_320 Hb_001314_050--Hb_000111_320 Hb_031862_100 Hb_031862_100 Hb_001314_050--Hb_031862_100 Hb_001671_100 Hb_001671_100 Hb_001314_050--Hb_001671_100 Hb_005914_170 Hb_005914_170 Hb_001314_050--Hb_005914_170 Hb_001189_070 Hb_001189_070 Hb_001314_050--Hb_001189_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.63368 2.82933 3.91497 6.08857 4.6624 4.56085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.25308 6.23564 7.58652 7.3454 6.06997

CAGE analysis