Hb_000072_340

Information

Type -
Description -
Location Contig72: 468590-469696
Sequence    

Annotation

kegg
ID rcu:RCOM_0095470
description hypothetical protein
nr
ID XP_002533492.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T5H3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0095470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55614: 469346-469684
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000072_340 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000120_150 0.1588605617 - - hypothetical protein JCGZ_08453 [Jatropha curcas]
3 Hb_000483_090 0.2085279253 - - -
4 Hb_020805_060 0.2125603898 - - PREDICTED: protein S-acyltransferase 21 [Jatropha curcas]
5 Hb_000270_740 0.2225589321 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
6 Hb_000291_270 0.2343156219 - - hypothetical protein JCGZ_12006 [Jatropha curcas]
7 Hb_000768_140 0.236359751 transcription factor TF Family: SWI/SNF-BAF60b tRNA (guanine-n(7)-)-methyltransferase, putative [Ricinus communis]
8 Hb_006570_050 0.2369540991 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
9 Hb_004787_040 0.2399843563 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000117_100 0.2425443037 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002227_010 0.2503253481 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Populus euphratica]
12 Hb_001164_030 0.2515863087 - - GMP synthase [glutamine-hydrolyzing] subunit A, putative [Ricinus communis]
13 Hb_006907_080 0.2522115141 - - PREDICTED: RPM1-interacting protein 4-like [Jatropha curcas]
14 Hb_000155_090 0.2531272483 - - PREDICTED: glutaredoxin-C9 [Jatropha curcas]
15 Hb_000042_360 0.2605408741 - - conserved hypothetical protein [Ricinus communis]
16 Hb_170426_010 0.2637600717 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
17 Hb_008215_030 0.26922916 - - hypothetical protein 3 [Hevea brasiliensis]
18 Hb_140049_010 0.270392652 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
19 Hb_001016_080 0.2748717937 - - hypothetical protein EUGRSUZ_J02452 [Eucalyptus grandis]
20 Hb_000367_070 0.2767980373 - - hypothetical protein JCGZ_11697 [Jatropha curcas]

Gene co-expression network

sample Hb_000072_340 Hb_000072_340 Hb_000120_150 Hb_000120_150 Hb_000072_340--Hb_000120_150 Hb_000483_090 Hb_000483_090 Hb_000072_340--Hb_000483_090 Hb_020805_060 Hb_020805_060 Hb_000072_340--Hb_020805_060 Hb_000270_740 Hb_000270_740 Hb_000072_340--Hb_000270_740 Hb_000291_270 Hb_000291_270 Hb_000072_340--Hb_000291_270 Hb_000768_140 Hb_000768_140 Hb_000072_340--Hb_000768_140 Hb_010506_010 Hb_010506_010 Hb_000120_150--Hb_010506_010 Hb_004787_040 Hb_004787_040 Hb_000120_150--Hb_004787_040 Hb_091889_010 Hb_091889_010 Hb_000120_150--Hb_091889_010 Hb_001164_030 Hb_001164_030 Hb_000120_150--Hb_001164_030 Hb_000120_150--Hb_000270_740 Hb_000483_090--Hb_000291_270 Hb_004100_090 Hb_004100_090 Hb_000483_090--Hb_004100_090 Hb_003007_010 Hb_003007_010 Hb_000483_090--Hb_003007_010 Hb_003540_200 Hb_003540_200 Hb_000483_090--Hb_003540_200 Hb_000483_090--Hb_020805_060 Hb_000483_090--Hb_001164_030 Hb_020805_060--Hb_000768_140 Hb_020805_060--Hb_001164_030 Hb_000011_300 Hb_000011_300 Hb_020805_060--Hb_000011_300 Hb_000189_540 Hb_000189_540 Hb_020805_060--Hb_000189_540 Hb_170426_010 Hb_170426_010 Hb_020805_060--Hb_170426_010 Hb_020805_060--Hb_004787_040 Hb_007441_240 Hb_007441_240 Hb_000270_740--Hb_007441_240 Hb_000270_740--Hb_004787_040 Hb_000739_140 Hb_000739_140 Hb_000270_740--Hb_000739_140 Hb_000768_130 Hb_000768_130 Hb_000270_740--Hb_000768_130 Hb_158104_020 Hb_158104_020 Hb_000270_740--Hb_158104_020 Hb_000382_020 Hb_000382_020 Hb_000270_740--Hb_000382_020 Hb_000291_270--Hb_003540_200 Hb_154141_030 Hb_154141_030 Hb_000291_270--Hb_154141_030 Hb_003020_330 Hb_003020_330 Hb_000291_270--Hb_003020_330 Hb_001016_080 Hb_001016_080 Hb_000291_270--Hb_001016_080 Hb_025645_030 Hb_025645_030 Hb_000291_270--Hb_025645_030 Hb_000768_140--Hb_001164_030 Hb_000768_140--Hb_001016_080 Hb_002243_060 Hb_002243_060 Hb_000768_140--Hb_002243_060 Hb_000768_140--Hb_000189_540 Hb_000768_140--Hb_000291_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.128927 0.300343 1.10361 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.329916 1.46911 0.449459 0.248973 0

CAGE analysis