Hb_000072_350

Information

Type -
Description -
Location Contig72: 471687-478253
Sequence    

Annotation

kegg
ID pop:POPTR_0017s14520g
description hypothetical protein
nr
ID XP_012088087.1
description PREDICTED: WPP domain-interacting tail-anchored protein 1 [Jatropha curcas]
swissprot
ID Q8L7E5
description WPP domain-interacting tail-anchored protein 1 OS=Arabidopsis thaliana GN=WIT1 PE=1 SV=2
trembl
ID A0A067JWE2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25611 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55615: 471221-473634 , PASA_asmbl_55617: 474529-475475
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000072_350 0.0 - - PREDICTED: WPP domain-interacting tail-anchored protein 1 [Jatropha curcas]
2 Hb_000743_040 0.0616767532 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
3 Hb_001502_060 0.0617111303 - - DNA mismatch repair protein MSH2, putative [Ricinus communis]
4 Hb_000320_200 0.0619953177 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
5 Hb_000529_260 0.068064623 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
6 Hb_003952_150 0.0713758333 - - PREDICTED: cactin [Jatropha curcas]
7 Hb_000329_090 0.0788280985 - - arginase, putative [Ricinus communis]
8 Hb_004128_050 0.0792796189 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
9 Hb_000033_030 0.0812679033 - - PREDICTED: ankyrin repeat protein SKIP35 [Jatropha curcas]
10 Hb_003044_020 0.083470969 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
11 Hb_106371_010 0.0839399915 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
12 Hb_000796_030 0.0839615391 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
13 Hb_009411_010 0.0847519527 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
14 Hb_002301_080 0.0850362522 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]
15 Hb_001541_020 0.0852993743 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
16 Hb_000101_240 0.0857365188 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
17 Hb_002221_050 0.0857893734 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
18 Hb_000510_310 0.086243156 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
19 Hb_000030_040 0.0862645732 - - yth domain-containing protein, putative [Ricinus communis]
20 Hb_004718_010 0.0870462013 - - PREDICTED: uncharacterized protein LOC105638290 [Jatropha curcas]

Gene co-expression network

sample Hb_000072_350 Hb_000072_350 Hb_000743_040 Hb_000743_040 Hb_000072_350--Hb_000743_040 Hb_001502_060 Hb_001502_060 Hb_000072_350--Hb_001502_060 Hb_000320_200 Hb_000320_200 Hb_000072_350--Hb_000320_200 Hb_000529_260 Hb_000529_260 Hb_000072_350--Hb_000529_260 Hb_003952_150 Hb_003952_150 Hb_000072_350--Hb_003952_150 Hb_000329_090 Hb_000329_090 Hb_000072_350--Hb_000329_090 Hb_000743_040--Hb_000329_090 Hb_000600_070 Hb_000600_070 Hb_000743_040--Hb_000600_070 Hb_003428_070 Hb_003428_070 Hb_000743_040--Hb_003428_070 Hb_000567_050 Hb_000567_050 Hb_000743_040--Hb_000567_050 Hb_010381_060 Hb_010381_060 Hb_000743_040--Hb_010381_060 Hb_007520_030 Hb_007520_030 Hb_001502_060--Hb_007520_030 Hb_001502_060--Hb_000529_260 Hb_002477_130 Hb_002477_130 Hb_001502_060--Hb_002477_130 Hb_000424_010 Hb_000424_010 Hb_001502_060--Hb_000424_010 Hb_004128_050 Hb_004128_050 Hb_001502_060--Hb_004128_050 Hb_001599_030 Hb_001599_030 Hb_000320_200--Hb_001599_030 Hb_002221_050 Hb_002221_050 Hb_000320_200--Hb_002221_050 Hb_000714_050 Hb_000714_050 Hb_000320_200--Hb_000714_050 Hb_000320_200--Hb_003952_150 Hb_000320_200--Hb_000743_040 Hb_000529_260--Hb_002221_050 Hb_000529_260--Hb_000424_010 Hb_007885_070 Hb_007885_070 Hb_000529_260--Hb_007885_070 Hb_019153_020 Hb_019153_020 Hb_000529_260--Hb_019153_020 Hb_000510_310 Hb_000510_310 Hb_000529_260--Hb_000510_310 Hb_000529_260--Hb_000320_200 Hb_016898_010 Hb_016898_010 Hb_003952_150--Hb_016898_010 Hb_000084_120 Hb_000084_120 Hb_003952_150--Hb_000084_120 Hb_000920_210 Hb_000920_210 Hb_003952_150--Hb_000920_210 Hb_003362_070 Hb_003362_070 Hb_003952_150--Hb_003362_070 Hb_003952_150--Hb_010381_060 Hb_000329_090--Hb_000714_050 Hb_000329_090--Hb_000567_050 Hb_000329_090--Hb_000320_200 Hb_001235_200 Hb_001235_200 Hb_000329_090--Hb_001235_200 Hb_000329_090--Hb_010381_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.5483 14.0865 4.62963 8.19365 26.6745 18.6738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3923 8.70352 11.1873 11.6762 10.5902

CAGE analysis