Hb_000073_040

Information

Type -
Description -
Location Contig73: 182519-182698
Sequence    

Annotation

kegg
ID pop:POPTR_0003s21020g
description POPTRDRAFT_749226; hypothetical protein
nr
ID XP_002303994.2
description hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
swissprot
ID Q9LVC0
description Arabinogalactan peptide 14 OS=Arabidopsis thaliana GN=AGP14 PE=1 SV=1
trembl
ID B9GY63
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0003s21020g PE=4 SV=2
Gene Ontology
ID GO:0005886
description arabinogalactan peptide 13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55920: 182365-183013
cDNA
(Sanger)
(ID:Location)		 007_L10.ab1: 182375-182945 , 023_A18.ab1: 182369-182965 , 025_F13.ab1: 182369-182965 , 030_C10.ab1: 182369-182945 , 052_C21.ab1: 182369-182945

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000073_040 0.0 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
2 Hb_001958_040 0.044333587 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
3 Hb_000397_060 0.0609905883 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
4 Hb_000258_400 0.0662456296 transcription factor TF Family: bHLH transcription regulator, putative [Ricinus communis]
5 Hb_072952_010 0.0722260391 - - PREDICTED: GDSL esterase/lipase At5g18430-like [Populus euphratica]
6 Hb_072620_010 0.0767020275 - - PREDICTED: receptor-like protein kinase 2 [Cucumis melo]
7 Hb_002045_160 0.0781667179 - - PREDICTED: DJ-1 protein homolog E-like [Jatropha curcas]
8 Hb_004007_050 0.0827386739 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT [Jatropha curcas]
9 Hb_019516_010 0.0831034815 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
10 Hb_000375_220 0.0850009317 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
11 Hb_007576_090 0.0851544546 - - lipid transfer protein precursor [Gossypium herbaceum subsp. africanum]
12 Hb_180535_010 0.0885945955 - - -
13 Hb_001623_250 0.0916111419 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
14 Hb_001301_310 0.0916564028 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006614_020 0.0926341947 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
16 Hb_000816_180 0.0931120154 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
17 Hb_007760_060 0.0936995382 transcription factor TF Family: MYB hypothetical protein POPTR_0010s17470g [Populus trichocarpa]
18 Hb_003006_070 0.093789355 - - aquaporin [Manihot esculenta]
19 Hb_061336_010 0.094489965 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004128_150 0.0952823427 - - hypothetical protein POPTR_0016s08360g [Populus trichocarpa]

Gene co-expression network

sample Hb_000073_040 Hb_000073_040 Hb_001958_040 Hb_001958_040 Hb_000073_040--Hb_001958_040 Hb_000397_060 Hb_000397_060 Hb_000073_040--Hb_000397_060 Hb_000258_400 Hb_000258_400 Hb_000073_040--Hb_000258_400 Hb_072952_010 Hb_072952_010 Hb_000073_040--Hb_072952_010 Hb_072620_010 Hb_072620_010 Hb_000073_040--Hb_072620_010 Hb_002045_160 Hb_002045_160 Hb_000073_040--Hb_002045_160 Hb_001958_040--Hb_000397_060 Hb_004007_050 Hb_004007_050 Hb_001958_040--Hb_004007_050 Hb_001301_310 Hb_001301_310 Hb_001958_040--Hb_001301_310 Hb_004128_150 Hb_004128_150 Hb_001958_040--Hb_004128_150 Hb_019516_010 Hb_019516_010 Hb_001958_040--Hb_019516_010 Hb_005357_140 Hb_005357_140 Hb_000397_060--Hb_005357_140 Hb_000397_060--Hb_072952_010 Hb_000010_320 Hb_000010_320 Hb_000397_060--Hb_000010_320 Hb_000397_060--Hb_001301_310 Hb_000258_400--Hb_072952_010 Hb_180535_010 Hb_180535_010 Hb_000258_400--Hb_180535_010 Hb_000816_180 Hb_000816_180 Hb_000258_400--Hb_000816_180 Hb_007576_090 Hb_007576_090 Hb_000258_400--Hb_007576_090 Hb_061336_010 Hb_061336_010 Hb_000258_400--Hb_061336_010 Hb_072952_010--Hb_061336_010 Hb_072952_010--Hb_007576_090 Hb_000375_100 Hb_000375_100 Hb_072952_010--Hb_000375_100 Hb_072952_010--Hb_180535_010 Hb_072952_010--Hb_000816_180 Hb_072620_010--Hb_000258_400 Hb_072620_010--Hb_072952_010 Hb_001257_070 Hb_001257_070 Hb_072620_010--Hb_001257_070 Hb_000671_020 Hb_000671_020 Hb_072620_010--Hb_000671_020 Hb_072620_010--Hb_002045_160 Hb_001053_170 Hb_001053_170 Hb_002045_160--Hb_001053_170 Hb_002045_160--Hb_000397_060 Hb_002045_160--Hb_001958_040 Hb_002045_160--Hb_000010_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.28103 424.618 230.866 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 7.28587 102.687

CAGE analysis