Hb_000074_060

Information

Type -
Description -
Location Contig74: 81838-89583
Sequence    

Annotation

kegg
ID zma:100192802
description hypothetical protein
nr
ID XP_011010109.1
description PREDICTED: membrane-associated progesterone-binding protein 4-like [Populus euphratica]
swissprot
ID Q9SK39
description Probable steroid-binding protein 3 OS=Arabidopsis thaliana GN=MP3 PE=1 SV=1
trembl
ID Q8H7H0
description Putative uncharacterized protein (Fragment) OS=Arabidopsis thaliana PE=2 SV=1
Gene Ontology
ID GO:0006301
description membrane-associated progesterone-binding protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56350: 81851-113369
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000074_060 0.0 - - PREDICTED: membrane-associated progesterone-binding protein 4-like [Populus euphratica]
2 Hb_005527_020 0.1253546583 - - PREDICTED: uncharacterized protein LOC105643027 [Jatropha curcas]
3 Hb_000329_560 0.1326778151 - - conserved hypothetical protein [Ricinus communis]
4 Hb_168973_010 0.1364505621 - - -
5 Hb_002562_110 0.136757341 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
6 Hb_106415_010 0.1374484969 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
7 Hb_129672_010 0.1394463031 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
8 Hb_019053_010 0.140185695 - - -
9 Hb_000825_030 0.1404056804 - - zinc binding dehydrogenase, putative [Ricinus communis]
10 Hb_082006_010 0.14509557 - - conserved hypothetical protein [Ricinus communis]
11 Hb_038237_010 0.1451003331 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
12 Hb_076875_020 0.1465281208 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
13 Hb_075764_010 0.1471331409 - - PREDICTED: PRA1 family protein A1-like [Jatropha curcas]
14 Hb_008096_030 0.1473542883 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
15 Hb_004466_060 0.1480484981 - - hypothetical protein POPTR_0009s12110g [Populus trichocarpa]
16 Hb_000635_070 0.1496703746 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
17 Hb_000676_080 0.1500302621 - - PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Jatropha curcas]
18 Hb_099878_050 0.1536116879 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
19 Hb_006663_090 0.1549917986 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
20 Hb_009270_030 0.1556591325 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000074_060 Hb_000074_060 Hb_005527_020 Hb_005527_020 Hb_000074_060--Hb_005527_020 Hb_000329_560 Hb_000329_560 Hb_000074_060--Hb_000329_560 Hb_168973_010 Hb_168973_010 Hb_000074_060--Hb_168973_010 Hb_002562_110 Hb_002562_110 Hb_000074_060--Hb_002562_110 Hb_106415_010 Hb_106415_010 Hb_000074_060--Hb_106415_010 Hb_129672_010 Hb_129672_010 Hb_000074_060--Hb_129672_010 Hb_000676_080 Hb_000676_080 Hb_005527_020--Hb_000676_080 Hb_001014_110 Hb_001014_110 Hb_005527_020--Hb_001014_110 Hb_004157_100 Hb_004157_100 Hb_005527_020--Hb_004157_100 Hb_001250_060 Hb_001250_060 Hb_005527_020--Hb_001250_060 Hb_000004_020 Hb_000004_020 Hb_005527_020--Hb_000004_020 Hb_054745_010 Hb_054745_010 Hb_005527_020--Hb_054745_010 Hb_005679_070 Hb_005679_070 Hb_000329_560--Hb_005679_070 Hb_026228_010 Hb_026228_010 Hb_000329_560--Hb_026228_010 Hb_005085_030 Hb_005085_030 Hb_000329_560--Hb_005085_030 Hb_004060_030 Hb_004060_030 Hb_000329_560--Hb_004060_030 Hb_006663_090 Hb_006663_090 Hb_000329_560--Hb_006663_090 Hb_008096_030 Hb_008096_030 Hb_168973_010--Hb_008096_030 Hb_115477_010 Hb_115477_010 Hb_168973_010--Hb_115477_010 Hb_115107_010 Hb_115107_010 Hb_168973_010--Hb_115107_010 Hb_005023_030 Hb_005023_030 Hb_168973_010--Hb_005023_030 Hb_007763_060 Hb_007763_060 Hb_168973_010--Hb_007763_060 Hb_082006_010 Hb_082006_010 Hb_002562_110--Hb_082006_010 Hb_000635_070 Hb_000635_070 Hb_002562_110--Hb_000635_070 Hb_002078_260 Hb_002078_260 Hb_002562_110--Hb_002078_260 Hb_009270_030 Hb_009270_030 Hb_002562_110--Hb_009270_030 Hb_004669_030 Hb_004669_030 Hb_002562_110--Hb_004669_030 Hb_000016_060 Hb_000016_060 Hb_002562_110--Hb_000016_060 Hb_099878_050 Hb_099878_050 Hb_106415_010--Hb_099878_050 Hb_033385_010 Hb_033385_010 Hb_106415_010--Hb_033385_010 Hb_007083_020 Hb_007083_020 Hb_106415_010--Hb_007083_020 Hb_019053_010 Hb_019053_010 Hb_106415_010--Hb_019053_010 Hb_007333_040 Hb_007333_040 Hb_106415_010--Hb_007333_040 Hb_000825_030 Hb_000825_030 Hb_106415_010--Hb_000825_030 Hb_129672_010--Hb_001250_060 Hb_129672_010--Hb_000676_080 Hb_129672_010--Hb_000635_070 Hb_129672_010--Hb_009270_030 Hb_129672_010--Hb_082006_010 Hb_086085_020 Hb_086085_020 Hb_129672_010--Hb_086085_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.16234 0.72617 2.07169 9.63935 2.8297 11.4465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.32537 4.4697 1.56657 3.40893 2.25036

CAGE analysis