Hb_000075_040

Information

Type -
Description -
Location Contig75: 97735-100358
Sequence    

Annotation

kegg
ID pvu:PHAVU_010G016900g
description hypothetical protein
nr
ID XP_012088026.1
description PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
swissprot
ID O80944
description Aldo-keto reductase family 4 member C8 OS=Arabidopsis thaliana GN=AKR4C8 PE=1 SV=2
trembl
ID A0A0D2SZC3
description Gossypium raimondii chromosome 6, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_006G170400 PE=4 SV=1
Gene Ontology
ID GO:0008106
description aldo-keto reductase family 4 member c9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56830: 98039-99082 , PASA_asmbl_56831: 98592-98761
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000075_040 0.0 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
2 Hb_004450_040 0.0487732099 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
3 Hb_001021_150 0.0614166091 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
4 Hb_001946_400 0.0755500869 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
5 Hb_001247_310 0.0760975189 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s00450g [Populus trichocarpa]
6 Hb_003292_030 0.0778490119 - - PREDICTED: exosome complex component RRP42 [Populus euphratica]
7 Hb_002553_060 0.078730702 - - PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial [Jatropha curcas]
8 Hb_004319_080 0.079253948 - - PREDICTED: GPI ethanolamine phosphate transferase 1 [Jatropha curcas]
9 Hb_001301_150 0.0806050349 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
10 Hb_000462_170 0.0819305897 - - conserved hypothetical protein [Ricinus communis]
11 Hb_012055_030 0.0836713819 - - Protein FRIGIDA, putative [Ricinus communis]
12 Hb_000749_010 0.0863399207 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
13 Hb_004310_140 0.0868858728 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
14 Hb_004846_220 0.0873261883 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
15 Hb_189216_020 0.0875233602 - - PREDICTED: translin [Jatropha curcas]
16 Hb_002439_010 0.0885324039 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
17 Hb_002592_060 0.0888959146 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005542_130 0.0892610399 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
19 Hb_000816_250 0.0902241277 - - PREDICTED: uncharacterized protein LOC105649197 isoform X1 [Jatropha curcas]
20 Hb_000035_470 0.0906319534 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000075_040 Hb_000075_040 Hb_004450_040 Hb_004450_040 Hb_000075_040--Hb_004450_040 Hb_001021_150 Hb_001021_150 Hb_000075_040--Hb_001021_150 Hb_001946_400 Hb_001946_400 Hb_000075_040--Hb_001946_400 Hb_001247_310 Hb_001247_310 Hb_000075_040--Hb_001247_310 Hb_003292_030 Hb_003292_030 Hb_000075_040--Hb_003292_030 Hb_002553_060 Hb_002553_060 Hb_000075_040--Hb_002553_060 Hb_000462_170 Hb_000462_170 Hb_004450_040--Hb_000462_170 Hb_004450_040--Hb_001946_400 Hb_004450_040--Hb_001021_150 Hb_001301_150 Hb_001301_150 Hb_004450_040--Hb_001301_150 Hb_000708_030 Hb_000708_030 Hb_004450_040--Hb_000708_030 Hb_002592_060 Hb_002592_060 Hb_001021_150--Hb_002592_060 Hb_008847_030 Hb_008847_030 Hb_001021_150--Hb_008847_030 Hb_001021_150--Hb_001946_400 Hb_000035_470 Hb_000035_470 Hb_001021_150--Hb_000035_470 Hb_006831_140 Hb_006831_140 Hb_001021_150--Hb_006831_140 Hb_000905_110 Hb_000905_110 Hb_001021_150--Hb_000905_110 Hb_014834_150 Hb_014834_150 Hb_001946_400--Hb_014834_150 Hb_001599_040 Hb_001599_040 Hb_001946_400--Hb_001599_040 Hb_001946_400--Hb_002553_060 Hb_001946_400--Hb_008847_030 Hb_007416_340 Hb_007416_340 Hb_001946_400--Hb_007416_340 Hb_000111_320 Hb_000111_320 Hb_001247_310--Hb_000111_320 Hb_000466_140 Hb_000466_140 Hb_001247_310--Hb_000466_140 Hb_001119_060 Hb_001119_060 Hb_001247_310--Hb_001119_060 Hb_000392_430 Hb_000392_430 Hb_001247_310--Hb_000392_430 Hb_004319_080 Hb_004319_080 Hb_001247_310--Hb_004319_080 Hb_012055_030 Hb_012055_030 Hb_003292_030--Hb_012055_030 Hb_005542_130 Hb_005542_130 Hb_003292_030--Hb_005542_130 Hb_003159_140 Hb_003159_140 Hb_003292_030--Hb_003159_140 Hb_004846_220 Hb_004846_220 Hb_003292_030--Hb_004846_220 Hb_003292_030--Hb_001247_310 Hb_002553_060--Hb_001021_150 Hb_001318_280 Hb_001318_280 Hb_002553_060--Hb_001318_280 Hb_008616_050 Hb_008616_050 Hb_002553_060--Hb_008616_050 Hb_000976_120 Hb_000976_120 Hb_002553_060--Hb_000976_120 Hb_189216_020 Hb_189216_020 Hb_002553_060--Hb_189216_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.47088 1.84009 3.01695 2.56367 2.55502 2.51067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.75392 3.87986 1.44271 3.6791 4.14607

CAGE analysis