Hb_000076_020

Information

Type -
Description -
Location Contig76: 19149-28248
Sequence    

Annotation

kegg
ID rcu:RCOM_0586570
description receptor serine-threonine protein kinase, putative (EC:2.7.10.2)
nr
ID XP_012071225.1
description PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
swissprot
ID Q9FE20
description Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1
trembl
ID A0A067L4S8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00851 PE=3 SV=1
Gene Ontology
ID GO:0009507
description serine threonine-protein kinase pbs1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57223: 23615-24604
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000076_020 0.0 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
2 Hb_000856_150 0.1449795786 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
3 Hb_000116_430 0.1477185302 - - PREDICTED: mitochondrial phosphate carrier protein 1, mitochondrial-like isoform X1 [Jatropha curcas]
4 Hb_029888_010 0.1614925464 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Nicotiana tomentosiformis]
5 Hb_001511_070 0.2011234992 transcription factor TF Family: G2-like hypothetical protein POPTR_0010s19310g [Populus trichocarpa]
6 Hb_000020_120 0.202708751 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
7 Hb_011609_090 0.2092516644 - - protein with unknown function [Ricinus communis]
8 Hb_000367_190 0.2097401222 - - hypothetical protein RCOM_1470550 [Ricinus communis]
9 Hb_009455_020 0.2104823992 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
10 Hb_042202_030 0.2106062466 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
11 Hb_001171_050 0.2171488148 - - PREDICTED: uncharacterized protein DDB_G0284459 [Jatropha curcas]
12 Hb_008725_170 0.2171547826 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Populus euphratica]
13 Hb_001414_030 0.2193261051 - - PREDICTED: aspartate-semialdehyde dehydrogenase [Jatropha curcas]
14 Hb_001433_130 0.2209732843 - - PREDICTED: uncharacterized protein LOC105647468 isoform X1 [Jatropha curcas]
15 Hb_000367_260 0.2225066736 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
16 Hb_000283_080 0.2238315379 - - -
17 Hb_000001_130 0.2242701774 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
18 Hb_011386_020 0.2264726105 - - unnamed protein product [Vitis vinifera]
19 Hb_002799_070 0.228443588 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
20 Hb_002291_010 0.2286988739 - - ring finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000076_020 Hb_000076_020 Hb_000856_150 Hb_000856_150 Hb_000076_020--Hb_000856_150 Hb_000116_430 Hb_000116_430 Hb_000076_020--Hb_000116_430 Hb_029888_010 Hb_029888_010 Hb_000076_020--Hb_029888_010 Hb_001511_070 Hb_001511_070 Hb_000076_020--Hb_001511_070 Hb_000020_120 Hb_000020_120 Hb_000076_020--Hb_000020_120 Hb_011609_090 Hb_011609_090 Hb_000076_020--Hb_011609_090 Hb_008725_170 Hb_008725_170 Hb_000856_150--Hb_008725_170 Hb_000856_150--Hb_000020_120 Hb_000856_150--Hb_001511_070 Hb_002205_130 Hb_002205_130 Hb_000856_150--Hb_002205_130 Hb_000856_150--Hb_000116_430 Hb_000116_430--Hb_029888_010 Hb_042202_030 Hb_042202_030 Hb_000116_430--Hb_042202_030 Hb_001414_030 Hb_001414_030 Hb_000116_430--Hb_001414_030 Hb_000116_430--Hb_000020_120 Hb_000116_430--Hb_001511_070 Hb_130279_010 Hb_130279_010 Hb_029888_010--Hb_130279_010 Hb_029888_010--Hb_001511_070 Hb_009455_020 Hb_009455_020 Hb_029888_010--Hb_009455_020 Hb_070256_010 Hb_070256_010 Hb_029888_010--Hb_070256_010 Hb_029888_010--Hb_000856_150 Hb_000283_080 Hb_000283_080 Hb_001511_070--Hb_000283_080 Hb_005188_020 Hb_005188_020 Hb_001511_070--Hb_005188_020 Hb_001511_070--Hb_002205_130 Hb_003020_220 Hb_003020_220 Hb_001511_070--Hb_003020_220 Hb_000479_140 Hb_000479_140 Hb_000020_120--Hb_000479_140 Hb_000020_120--Hb_042202_030 Hb_000406_130 Hb_000406_130 Hb_000020_120--Hb_000406_130 Hb_007416_060 Hb_007416_060 Hb_000020_120--Hb_007416_060 Hb_000020_120--Hb_008725_170 Hb_003376_250 Hb_003376_250 Hb_000020_120--Hb_003376_250 Hb_004123_020 Hb_004123_020 Hb_011609_090--Hb_004123_020 Hb_002045_060 Hb_002045_060 Hb_011609_090--Hb_002045_060 Hb_015183_060 Hb_015183_060 Hb_011609_090--Hb_015183_060 Hb_001171_050 Hb_001171_050 Hb_011609_090--Hb_001171_050 Hb_000457_290 Hb_000457_290 Hb_011609_090--Hb_000457_290 Hb_001604_150 Hb_001604_150 Hb_011609_090--Hb_001604_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0611802 0.0342838 0.0689516 0.0204404 0 0.0385694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0883952 0.0927263 0.218178 0.157198 0.145791

CAGE analysis