Hb_000076_080

Information

Type -
Description -
Location Contig76: 57617-61518
Sequence    

Annotation

kegg
ID rcu:RCOM_0586970
description Protein MOS2, putative
nr
ID XP_012070772.1
description PREDICTED: protein MOS2 [Jatropha curcas]
swissprot
ID Q9C801
description Protein MOS2 OS=Arabidopsis thaliana GN=MOS2 PE=2 SV=1
trembl
ID B9SAH9
description Protein MOS2, putative OS=Ricinus communis GN=RCOM_0586970 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein mos2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57237: 59822-61407 , PASA_asmbl_57238: 61860-64835 , PASA_asmbl_57239: 61951-64835
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000076_080 0.0 - - PREDICTED: protein MOS2 [Jatropha curcas]
2 Hb_001504_160 0.0411213723 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
3 Hb_004724_360 0.0447990228 - - OTU-like cysteine protease family protein [Populus trichocarpa]
4 Hb_000684_420 0.0454138798 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
5 Hb_002097_090 0.0562243206 - - Splicing factor 3A subunit, putative [Ricinus communis]
6 Hb_002400_180 0.061766332 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000186_280 0.0627157417 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
8 Hb_003384_030 0.063273377 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
9 Hb_001019_170 0.067848841 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
10 Hb_000001_180 0.0683859196 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
11 Hb_000230_330 0.0699348991 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
12 Hb_000462_150 0.0706618731 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
13 Hb_001829_010 0.0730548519 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
14 Hb_001366_040 0.0737038618 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
15 Hb_000390_060 0.0753441714 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
16 Hb_009620_040 0.0754759594 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
17 Hb_005295_040 0.0759320253 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
18 Hb_003434_060 0.0761828453 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
19 Hb_002007_250 0.0769619221 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001437_100 0.0771526988 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000076_080 Hb_000076_080 Hb_001504_160 Hb_001504_160 Hb_000076_080--Hb_001504_160 Hb_004724_360 Hb_004724_360 Hb_000076_080--Hb_004724_360 Hb_000684_420 Hb_000684_420 Hb_000076_080--Hb_000684_420 Hb_002097_090 Hb_002097_090 Hb_000076_080--Hb_002097_090 Hb_002400_180 Hb_002400_180 Hb_000076_080--Hb_002400_180 Hb_000186_280 Hb_000186_280 Hb_000076_080--Hb_000186_280 Hb_012654_010 Hb_012654_010 Hb_001504_160--Hb_012654_010 Hb_000230_330 Hb_000230_330 Hb_001504_160--Hb_000230_330 Hb_001504_160--Hb_004724_360 Hb_000107_100 Hb_000107_100 Hb_001504_160--Hb_000107_100 Hb_003384_030 Hb_003384_030 Hb_001504_160--Hb_003384_030 Hb_000327_310 Hb_000327_310 Hb_004724_360--Hb_000327_310 Hb_004724_360--Hb_000684_420 Hb_000001_180 Hb_000001_180 Hb_004724_360--Hb_000001_180 Hb_005295_040 Hb_005295_040 Hb_004724_360--Hb_005295_040 Hb_000684_420--Hb_002097_090 Hb_000684_420--Hb_000186_280 Hb_000684_420--Hb_002400_180 Hb_073171_080 Hb_073171_080 Hb_000684_420--Hb_073171_080 Hb_000645_150 Hb_000645_150 Hb_002097_090--Hb_000645_150 Hb_004934_090 Hb_004934_090 Hb_002097_090--Hb_004934_090 Hb_009620_040 Hb_009620_040 Hb_002097_090--Hb_009620_040 Hb_000803_300 Hb_000803_300 Hb_002097_090--Hb_000803_300 Hb_003581_120 Hb_003581_120 Hb_002400_180--Hb_003581_120 Hb_004678_060 Hb_004678_060 Hb_002400_180--Hb_004678_060 Hb_002400_180--Hb_000803_300 Hb_002400_180--Hb_002097_090 Hb_000034_050 Hb_000034_050 Hb_002400_180--Hb_000034_050 Hb_001969_040 Hb_001969_040 Hb_000186_280--Hb_001969_040 Hb_000186_280--Hb_002400_180 Hb_000186_280--Hb_000645_150 Hb_012305_070 Hb_012305_070 Hb_000186_280--Hb_012305_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
72.6253 32.3863 14.5879 15.3583 80.9477 99.8698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.8776 32.7309 34.9577 28.6531 15.285

CAGE analysis