Hb_000076_090

Information

Type -
Description -
Location Contig76: 61909-64772
Sequence    

Annotation

kegg
ID rcu:RCOM_0586980
description protein with unknown function
nr
ID XP_002522999.1
description protein with unknown function [Ricinus communis]
swissprot
ID P51910
description Apolipoprotein D OS=Mus musculus GN=Apod PE=2 SV=1
trembl
ID B9SAI0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0586980 PE=4 SV=1
Gene Ontology
ID GO:0009535
description apolipoprotein d

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57238: 61860-64835 , PASA_asmbl_57239: 61951-64835
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000076_090 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_002301_210 0.1272043627 - - PREDICTED: receptor-like protein kinase At5g59670 isoform X2 [Jatropha curcas]
3 Hb_000136_020 0.1441828313 - - PREDICTED: F-box/kelch-repeat protein At1g80440-like [Jatropha curcas]
4 Hb_107078_010 0.1449907362 - - -
5 Hb_001975_050 0.1451399196 - - Tyrosine-specific transport protein, putative [Ricinus communis]
6 Hb_001250_040 0.1511007225 - - hypothetical protein CISIN_1g018444mg [Citrus sinensis]
7 Hb_000093_140 0.1568053045 - - PREDICTED: fructokinase-like 2, chloroplastic [Jatropha curcas]
8 Hb_000637_070 0.1577032974 - - PREDICTED: uncharacterized protein LOC105650668 [Jatropha curcas]
9 Hb_003894_060 0.1646069892 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000928_250 0.1647959185 - - calcium ion binding protein, putative [Ricinus communis]
11 Hb_001021_100 0.1648905155 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]
12 Hb_003683_030 0.1660821176 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
13 Hb_001894_160 0.167028347 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006935_040 0.1716138679 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
15 Hb_000317_190 0.1730840352 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
16 Hb_005214_070 0.17335325 - - PREDICTED: fatty acid amide hydrolase [Jatropha curcas]
17 Hb_001624_040 0.1743421745 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Jatropha curcas]
18 Hb_188739_010 0.1749179326 - - protein binding protein, putative [Ricinus communis]
19 Hb_001689_050 0.1753047754 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
20 Hb_001863_340 0.1766426245 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]

Gene co-expression network

sample Hb_000076_090 Hb_000076_090 Hb_002301_210 Hb_002301_210 Hb_000076_090--Hb_002301_210 Hb_000136_020 Hb_000136_020 Hb_000076_090--Hb_000136_020 Hb_107078_010 Hb_107078_010 Hb_000076_090--Hb_107078_010 Hb_001975_050 Hb_001975_050 Hb_000076_090--Hb_001975_050 Hb_001250_040 Hb_001250_040 Hb_000076_090--Hb_001250_040 Hb_000093_140 Hb_000093_140 Hb_000076_090--Hb_000093_140 Hb_001624_040 Hb_001624_040 Hb_002301_210--Hb_001624_040 Hb_002301_210--Hb_001250_040 Hb_000803_090 Hb_000803_090 Hb_002301_210--Hb_000803_090 Hb_001689_050 Hb_001689_050 Hb_002301_210--Hb_001689_050 Hb_003894_060 Hb_003894_060 Hb_002301_210--Hb_003894_060 Hb_000136_020--Hb_001250_040 Hb_001571_030 Hb_001571_030 Hb_000136_020--Hb_001571_030 Hb_000136_020--Hb_002301_210 Hb_001863_340 Hb_001863_340 Hb_000136_020--Hb_001863_340 Hb_000928_250 Hb_000928_250 Hb_000136_020--Hb_000928_250 Hb_011918_030 Hb_011918_030 Hb_107078_010--Hb_011918_030 Hb_008173_130 Hb_008173_130 Hb_107078_010--Hb_008173_130 Hb_000260_240 Hb_000260_240 Hb_107078_010--Hb_000260_240 Hb_001638_120 Hb_001638_120 Hb_107078_010--Hb_001638_120 Hb_000020_080 Hb_000020_080 Hb_107078_010--Hb_000020_080 Hb_188739_010 Hb_188739_010 Hb_001975_050--Hb_188739_010 Hb_000637_070 Hb_000637_070 Hb_001975_050--Hb_000637_070 Hb_002435_090 Hb_002435_090 Hb_001975_050--Hb_002435_090 Hb_001343_120 Hb_001343_120 Hb_001975_050--Hb_001343_120 Hb_003992_050 Hb_003992_050 Hb_001975_050--Hb_003992_050 Hb_027654_070 Hb_027654_070 Hb_001975_050--Hb_027654_070 Hb_001250_040--Hb_001689_050 Hb_003683_030 Hb_003683_030 Hb_001250_040--Hb_003683_030 Hb_001250_040--Hb_001571_030 Hb_007594_080 Hb_007594_080 Hb_001250_040--Hb_007594_080 Hb_001250_040--Hb_001624_040 Hb_004346_040 Hb_004346_040 Hb_000093_140--Hb_004346_040 Hb_000093_140--Hb_003894_060 Hb_003055_070 Hb_003055_070 Hb_000093_140--Hb_003055_070 Hb_007765_130 Hb_007765_130 Hb_000093_140--Hb_007765_130 Hb_005214_070 Hb_005214_070 Hb_000093_140--Hb_005214_070 Hb_004324_120 Hb_004324_120 Hb_000093_140--Hb_004324_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8724 25.1487 71.1415 12.1105 4.65746 7.31089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.02694 0.875092 1.12438 5.78903 30.1536

CAGE analysis