Hb_000076_120

Information

Type -
Description -
Location Contig76: 85260-90977
Sequence    

Annotation

kegg
ID tcc:TCM_030975
description SMAD/FHA domain-containing protein isoform 1
nr
ID XP_012070766.1
description PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
swissprot
ID Q8W4D8
description FHA domain-containing protein DDL OS=Arabidopsis thaliana GN=DDL PE=1 SV=1
trembl
ID A0A067L3K1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00837 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57243: 85333-90981 , PASA_asmbl_57244: 85421-90788
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000076_120 0.0 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
2 Hb_000058_100 0.069599841 - - PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]
3 Hb_000926_280 0.069846158 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
4 Hb_004310_130 0.0709846527 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
5 Hb_000053_130 0.0717215176 - - PREDICTED: uncharacterized protein At1g26090, chloroplastic [Jatropha curcas]
6 Hb_150360_030 0.0736236401 - - PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Jatropha curcas]
7 Hb_007218_080 0.0779744178 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
8 Hb_000166_110 0.0790556161 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 25 [Jatropha curcas]
9 Hb_000373_240 0.0808812403 - - PREDICTED: uncharacterized protein LOC105640940 isoform X1 [Jatropha curcas]
10 Hb_000889_020 0.0816935009 - - ribosome biogenesis protein brix, putative [Ricinus communis]
11 Hb_004055_030 0.0859844306 - - casein kinase, putative [Ricinus communis]
12 Hb_002391_300 0.0865659172 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
13 Hb_003001_120 0.0877717493 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
14 Hb_011689_080 0.0879059572 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
15 Hb_000498_010 0.0897189214 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_001369_180 0.0899822028 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
17 Hb_002030_030 0.0905564295 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
18 Hb_076787_010 0.0914754392 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]
19 Hb_002616_050 0.0917900164 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
20 Hb_004096_030 0.0924424434 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000076_120 Hb_000076_120 Hb_000058_100 Hb_000058_100 Hb_000076_120--Hb_000058_100 Hb_000926_280 Hb_000926_280 Hb_000076_120--Hb_000926_280 Hb_004310_130 Hb_004310_130 Hb_000076_120--Hb_004310_130 Hb_000053_130 Hb_000053_130 Hb_000076_120--Hb_000053_130 Hb_150360_030 Hb_150360_030 Hb_000076_120--Hb_150360_030 Hb_007218_080 Hb_007218_080 Hb_000076_120--Hb_007218_080 Hb_001199_020 Hb_001199_020 Hb_000058_100--Hb_001199_020 Hb_003813_130 Hb_003813_130 Hb_000058_100--Hb_003813_130 Hb_027472_150 Hb_027472_150 Hb_000058_100--Hb_027472_150 Hb_004055_030 Hb_004055_030 Hb_000058_100--Hb_004055_030 Hb_000058_100--Hb_004310_130 Hb_003175_010 Hb_003175_010 Hb_000926_280--Hb_003175_010 Hb_000030_300 Hb_000030_300 Hb_000926_280--Hb_000030_300 Hb_007951_060 Hb_007951_060 Hb_000926_280--Hb_007951_060 Hb_011689_080 Hb_011689_080 Hb_000926_280--Hb_011689_080 Hb_002391_300 Hb_002391_300 Hb_000926_280--Hb_002391_300 Hb_000327_120 Hb_000327_120 Hb_000926_280--Hb_000327_120 Hb_004310_130--Hb_007218_080 Hb_004310_130--Hb_150360_030 Hb_001369_180 Hb_001369_180 Hb_004310_130--Hb_001369_180 Hb_000086_380 Hb_000086_380 Hb_004310_130--Hb_000086_380 Hb_001635_170 Hb_001635_170 Hb_004310_130--Hb_001635_170 Hb_000059_330 Hb_000059_330 Hb_004310_130--Hb_000059_330 Hb_000053_130--Hb_150360_030 Hb_000053_130--Hb_000058_100 Hb_054865_120 Hb_054865_120 Hb_000053_130--Hb_054865_120 Hb_000299_040 Hb_000299_040 Hb_000053_130--Hb_000299_040 Hb_000094_300 Hb_000094_300 Hb_000053_130--Hb_000094_300 Hb_150360_030--Hb_007218_080 Hb_150360_030--Hb_001635_170 Hb_150360_030--Hb_001369_180 Hb_007218_080--Hb_001369_180 Hb_003406_010 Hb_003406_010 Hb_007218_080--Hb_003406_010 Hb_007218_080--Hb_002391_300 Hb_003030_070 Hb_003030_070 Hb_007218_080--Hb_003030_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.1603 5.35989 10.7302 5.48558 15.1391 22.7064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.259 12.3242 12.8721 10.1006 6.63848

CAGE analysis