Hb_000076_160

Information

Type -
Description -
Location Contig76: 110412-117695
Sequence    

Annotation

kegg
ID pmum:103342520
description AP-5 complex subunit zeta-1
nr
ID XP_012070759.1
description PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
swissprot
ID Q3U829
description AP-5 complex subunit zeta-1 OS=Mus musculus GN=Ap5z1 PE=2 SV=1
trembl
ID A0A022PTV2
description Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a004494mg PE=4 SV=1
Gene Ontology
ID GO:0044599
description ap-5 complex subunit zeta-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57247: 110378-110570 , PASA_asmbl_57248: 110733-112299 , PASA_asmbl_57249: 113729-116324 , PASA_asmbl_57250: 113729-114760 , PASA_asmbl_57251: 116503-117489
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000076_160 0.0 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
2 Hb_005306_160 0.0530046307 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
3 Hb_000928_220 0.0552670058 - - PREDICTED: protein SCAI [Jatropha curcas]
4 Hb_000679_310 0.0569535049 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
5 Hb_000358_230 0.0595278364 - - protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]
6 Hb_000087_060 0.0603427433 - - protein transporter, putative [Ricinus communis]
7 Hb_001751_140 0.0605568827 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
8 Hb_000576_020 0.061643544 - - PREDICTED: uncharacterized protein LOC105638286 [Jatropha curcas]
9 Hb_002876_130 0.0628540286 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
10 Hb_001205_200 0.0629857415 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002078_110 0.0634720369 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
12 Hb_000402_080 0.0636306964 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
13 Hb_003096_060 0.0642052429 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
14 Hb_000309_040 0.0671443731 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
15 Hb_000289_040 0.0684240828 - - Poly(A) polymerase alpha, putative [Ricinus communis]
16 Hb_002078_220 0.068976852 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
17 Hb_006916_040 0.0697364028 - - 60S ribosomal protein L7a, putative [Ricinus communis]
18 Hb_003927_040 0.0701553723 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
19 Hb_000070_080 0.0705499616 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
20 Hb_002872_030 0.0705866323 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]

Gene co-expression network

sample Hb_000076_160 Hb_000076_160 Hb_005306_160 Hb_005306_160 Hb_000076_160--Hb_005306_160 Hb_000928_220 Hb_000928_220 Hb_000076_160--Hb_000928_220 Hb_000679_310 Hb_000679_310 Hb_000076_160--Hb_000679_310 Hb_000358_230 Hb_000358_230 Hb_000076_160--Hb_000358_230 Hb_000087_060 Hb_000087_060 Hb_000076_160--Hb_000087_060 Hb_001751_140 Hb_001751_140 Hb_000076_160--Hb_001751_140 Hb_002046_110 Hb_002046_110 Hb_005306_160--Hb_002046_110 Hb_005306_160--Hb_000928_220 Hb_000576_020 Hb_000576_020 Hb_005306_160--Hb_000576_020 Hb_000070_080 Hb_000070_080 Hb_005306_160--Hb_000070_080 Hb_000309_040 Hb_000309_040 Hb_005306_160--Hb_000309_040 Hb_000402_080 Hb_000402_080 Hb_000928_220--Hb_000402_080 Hb_002876_130 Hb_002876_130 Hb_000928_220--Hb_002876_130 Hb_002078_110 Hb_002078_110 Hb_000928_220--Hb_002078_110 Hb_002835_230 Hb_002835_230 Hb_000928_220--Hb_002835_230 Hb_000928_220--Hb_002046_110 Hb_000289_040 Hb_000289_040 Hb_000679_310--Hb_000289_040 Hb_011609_140 Hb_011609_140 Hb_000679_310--Hb_011609_140 Hb_000696_230 Hb_000696_230 Hb_000679_310--Hb_000696_230 Hb_028962_020 Hb_028962_020 Hb_000679_310--Hb_028962_020 Hb_000679_310--Hb_002876_130 Hb_000358_230--Hb_000087_060 Hb_003096_060 Hb_003096_060 Hb_000358_230--Hb_003096_060 Hb_001205_200 Hb_001205_200 Hb_000358_230--Hb_001205_200 Hb_154580_010 Hb_154580_010 Hb_000358_230--Hb_154580_010 Hb_000358_230--Hb_000928_220 Hb_000087_060--Hb_001205_200 Hb_002492_010 Hb_002492_010 Hb_000087_060--Hb_002492_010 Hb_001089_050 Hb_001089_050 Hb_000087_060--Hb_001089_050 Hb_000454_130 Hb_000454_130 Hb_000087_060--Hb_000454_130 Hb_001635_040 Hb_001635_040 Hb_001751_140--Hb_001635_040 Hb_003927_040 Hb_003927_040 Hb_001751_140--Hb_003927_040 Hb_008568_020 Hb_008568_020 Hb_001751_140--Hb_008568_020 Hb_001728_050 Hb_001728_050 Hb_001751_140--Hb_001728_050 Hb_000803_070 Hb_000803_070 Hb_001751_140--Hb_000803_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.37348 6.86986 5.64266 5.3539 5.55899 5.24848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.89363 4.879 3.2582 3.90691 2.59328

CAGE analysis