Hb_000076_200

Information

Type -
Description -
Location Contig76: 146739-147602
Sequence    

Annotation

kegg
ID rcu:RCOM_0185030
description hypothetical protein
nr
ID XP_002522866.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SA47
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0185030 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000076_200 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003968_020 0.0681910729 - - PREDICTED: limonoid UDP-glucosyltransferase-like [Glycine max]
3 Hb_007532_050 0.0757042287 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
4 Hb_004037_010 0.0813381185 - - PREDICTED: uncharacterized protein LOC105632369 [Jatropha curcas]
5 Hb_005356_010 0.0916418803 - - hypothetical protein POPTR_0003s16550g [Populus trichocarpa]
6 Hb_000161_250 0.09594581 transcription factor TF Family: Tify conserved hypothetical protein [Ricinus communis]
7 Hb_007527_020 0.0967320844 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
8 Hb_011486_030 0.0976713616 - - branched-chain amino acid aminotransferase, putative [Ricinus communis]
9 Hb_000301_030 0.1013693528 - - PREDICTED: pectate lyase-like [Jatropha curcas]
10 Hb_000318_440 0.1022798397 - - PREDICTED: allene oxide synthase 2-like [Jatropha curcas]
11 Hb_010407_120 0.1044754049 - - PREDICTED: glutathione transferase GST 23-like [Jatropha curcas]
12 Hb_039562_010 0.105946953 - - PREDICTED: protein SRG1-like [Jatropha curcas]
13 Hb_000281_200 0.1063639306 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
14 Hb_002805_230 0.1072879562 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
15 Hb_000120_440 0.1105399541 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001544_040 0.113156027 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
17 Hb_006620_040 0.1137370761 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]
18 Hb_001288_010 0.1156929383 - - -
19 Hb_012660_010 0.1160724899 - - hypothetical protein JCGZ_25971 [Jatropha curcas]
20 Hb_000907_190 0.1185151861 - - PREDICTED: uncharacterized protein At4g15970-like [Jatropha curcas]

Gene co-expression network

sample Hb_000076_200 Hb_000076_200 Hb_003968_020 Hb_003968_020 Hb_000076_200--Hb_003968_020 Hb_007532_050 Hb_007532_050 Hb_000076_200--Hb_007532_050 Hb_004037_010 Hb_004037_010 Hb_000076_200--Hb_004037_010 Hb_005356_010 Hb_005356_010 Hb_000076_200--Hb_005356_010 Hb_000161_250 Hb_000161_250 Hb_000076_200--Hb_000161_250 Hb_007527_020 Hb_007527_020 Hb_000076_200--Hb_007527_020 Hb_023080_010 Hb_023080_010 Hb_003968_020--Hb_023080_010 Hb_006620_040 Hb_006620_040 Hb_003968_020--Hb_006620_040 Hb_039562_010 Hb_039562_010 Hb_003968_020--Hb_039562_010 Hb_000281_200 Hb_000281_200 Hb_003968_020--Hb_000281_200 Hb_001288_010 Hb_001288_010 Hb_003968_020--Hb_001288_010 Hb_002805_230 Hb_002805_230 Hb_007532_050--Hb_002805_230 Hb_003090_070 Hb_003090_070 Hb_007532_050--Hb_003090_070 Hb_000059_100 Hb_000059_100 Hb_007532_050--Hb_000059_100 Hb_000318_440 Hb_000318_440 Hb_007532_050--Hb_000318_440 Hb_007532_050--Hb_007527_020 Hb_009545_040 Hb_009545_040 Hb_004037_010--Hb_009545_040 Hb_000120_440 Hb_000120_440 Hb_004037_010--Hb_000120_440 Hb_000021_090 Hb_000021_090 Hb_004037_010--Hb_000021_090 Hb_025490_030 Hb_025490_030 Hb_004037_010--Hb_025490_030 Hb_001165_040 Hb_001165_040 Hb_004037_010--Hb_001165_040 Hb_005356_010--Hb_007527_020 Hb_005356_010--Hb_000281_200 Hb_000301_030 Hb_000301_030 Hb_005356_010--Hb_000301_030 Hb_178389_020 Hb_178389_020 Hb_005356_010--Hb_178389_020 Hb_001544_040 Hb_001544_040 Hb_005356_010--Hb_001544_040 Hb_005356_010--Hb_001288_010 Hb_000161_250--Hb_004037_010 Hb_000116_550 Hb_000116_550 Hb_000161_250--Hb_000116_550 Hb_000200_180 Hb_000200_180 Hb_000161_250--Hb_000200_180 Hb_002521_010 Hb_002521_010 Hb_000161_250--Hb_002521_010 Hb_144783_010 Hb_144783_010 Hb_000161_250--Hb_144783_010 Hb_007527_020--Hb_002805_230 Hb_007527_020--Hb_000281_200 Hb_000513_110 Hb_000513_110 Hb_007527_020--Hb_000513_110 Hb_007527_020--Hb_001544_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.193703 0.0579725 0.450252 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.05125 0.136403

CAGE analysis