Hb_000076_220

Information

Type -
Description -
Location Contig76: 162763-173043
Sequence    

Annotation

kegg
ID rcu:RCOM_0185010
description thioredoxin domain-containing protein, putative (EC:5.3.4.1)
nr
ID XP_002522864.1
description thioredoxin domain-containing protein, putative [Ricinus communis]
swissprot
ID Q9LJU2
description Protein disulfide-isomerase 5-3 OS=Arabidopsis thaliana GN=PDIL5-3 PE=2 SV=1
trembl
ID B9SA45
description Thioredoxin domain-containing protein, putative OS=Ricinus communis GN=RCOM_0185010 PE=4 SV=1
Gene Ontology
ID GO:0005623
description protein disulfide-isomerase 5-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57254: 162782-165808
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000076_220 0.0 - - thioredoxin domain-containing protein, putative [Ricinus communis]
2 Hb_003058_120 0.0681012623 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
3 Hb_000853_150 0.0690056726 - - Fumarase 1 isoform 2 [Theobroma cacao]
4 Hb_000774_020 0.0749610099 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
5 Hb_006846_130 0.0751843411 - - PREDICTED: carbonyl reductase [NADPH] 1-like [Jatropha curcas]
6 Hb_000130_270 0.0800997353 - - PREDICTED: malate dehydrogenase, mitochondrial [Jatropha curcas]
7 Hb_000260_470 0.0803044186 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
8 Hb_005271_040 0.0815493636 - - PREDICTED: serine racemase [Jatropha curcas]
9 Hb_004994_210 0.0820181211 - - phosphomannomutase family protein [Populus trichocarpa]
10 Hb_005588_060 0.0835783163 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
11 Hb_006573_190 0.0861775452 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
12 Hb_000663_060 0.0871158711 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
13 Hb_000920_200 0.0891921796 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
14 Hb_005288_130 0.0902318373 - - protein with unknown function [Ricinus communis]
15 Hb_000392_420 0.0908297505 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
16 Hb_003207_180 0.0920527396 - - PREDICTED: uncharacterized protein LOC105645887 isoform X2 [Jatropha curcas]
17 Hb_000069_720 0.09237299 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
18 Hb_000174_260 0.0929649304 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]
19 Hb_001472_100 0.0934116128 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
20 Hb_006538_090 0.0938254986 - - PREDICTED: IST1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000076_220 Hb_000076_220 Hb_003058_120 Hb_003058_120 Hb_000076_220--Hb_003058_120 Hb_000853_150 Hb_000853_150 Hb_000076_220--Hb_000853_150 Hb_000774_020 Hb_000774_020 Hb_000076_220--Hb_000774_020 Hb_006846_130 Hb_006846_130 Hb_000076_220--Hb_006846_130 Hb_000130_270 Hb_000130_270 Hb_000076_220--Hb_000130_270 Hb_000260_470 Hb_000260_470 Hb_000076_220--Hb_000260_470 Hb_003058_120--Hb_000853_150 Hb_005588_060 Hb_005588_060 Hb_003058_120--Hb_005588_060 Hb_023001_040 Hb_023001_040 Hb_003058_120--Hb_023001_040 Hb_000392_420 Hb_000392_420 Hb_003058_120--Hb_000392_420 Hb_000167_010 Hb_000167_010 Hb_003058_120--Hb_000167_010 Hb_004157_050 Hb_004157_050 Hb_003058_120--Hb_004157_050 Hb_001218_030 Hb_001218_030 Hb_000853_150--Hb_001218_030 Hb_000853_150--Hb_005588_060 Hb_001828_150 Hb_001828_150 Hb_000853_150--Hb_001828_150 Hb_000460_030 Hb_000460_030 Hb_000853_150--Hb_000460_030 Hb_005271_040 Hb_005271_040 Hb_000774_020--Hb_005271_040 Hb_002681_100 Hb_002681_100 Hb_000774_020--Hb_002681_100 Hb_010578_080 Hb_010578_080 Hb_000774_020--Hb_010578_080 Hb_000774_020--Hb_000853_150 Hb_000774_020--Hb_000260_470 Hb_002301_150 Hb_002301_150 Hb_006846_130--Hb_002301_150 Hb_006846_130--Hb_000130_270 Hb_006573_190 Hb_006573_190 Hb_006846_130--Hb_006573_190 Hb_003582_060 Hb_003582_060 Hb_006846_130--Hb_003582_060 Hb_001931_010 Hb_001931_010 Hb_006846_130--Hb_001931_010 Hb_032202_100 Hb_032202_100 Hb_000130_270--Hb_032202_100 Hb_161574_020 Hb_161574_020 Hb_000130_270--Hb_161574_020 Hb_163175_010 Hb_163175_010 Hb_000130_270--Hb_163175_010 Hb_000086_170 Hb_000086_170 Hb_000130_270--Hb_000086_170 Hb_000260_470--Hb_005271_040 Hb_001660_100 Hb_001660_100 Hb_000260_470--Hb_001660_100 Hb_006570_160 Hb_006570_160 Hb_000260_470--Hb_006570_160 Hb_159809_070 Hb_159809_070 Hb_000260_470--Hb_159809_070 Hb_079526_040 Hb_079526_040 Hb_000260_470--Hb_079526_040 Hb_000260_470--Hb_000392_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.20509 0.824136 2.42261 2.09472 0.860084 0.752914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.55894 2.12048 1.33483 1.9879 1.4433

CAGE analysis