Hb_000076_260

Information

Type -
Description -
Location Contig76: 188994-198743
Sequence    

Annotation

kegg
ID gtt:GUITHDRAFT_149979
description hypothetical protein
nr
ID XP_005841305.1
description hypothetical protein GUITHDRAFT_149979 [Guillardia theta CCMP2712]
swissprot
ID Q80WW9
description DDRGK domain-containing protein 1 OS=Mus musculus GN=Ddrgk1 PE=1 SV=2
trembl
ID L1K1L6
description Uncharacterized protein OS=Guillardia theta CCMP2712 GN=GUITHDRAFT_149979 PE=4 SV=1
Gene Ontology
ID GO:0005622
description ddrgk domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57261: 188998-200951
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000076_260 0.0 - - hypothetical protein GUITHDRAFT_149979 [Guillardia theta CCMP2712]
2 Hb_000453_140 0.0972761884 - - hypothetical protein POPTR_0009s02600g [Populus trichocarpa]
3 Hb_002092_100 0.1003337758 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
4 Hb_000661_020 0.1013228234 - - BnaC08g27190D [Brassica napus]
5 Hb_000735_100 0.1015279791 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
6 Hb_011915_010 0.1032379823 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
7 Hb_150651_030 0.1048891158 - - PREDICTED: metallophosphoesterase 1-like [Jatropha curcas]
8 Hb_002093_030 0.1081711622 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
9 Hb_002896_060 0.1095907453 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
10 Hb_002249_160 0.1101718258 - - -
11 Hb_000156_160 0.1115413221 - - PREDICTED: urease accessory protein G [Jatropha curcas]
12 Hb_001213_130 0.1119563704 - - PREDICTED: fructokinase-like 1, chloroplastic [Jatropha curcas]
13 Hb_000922_020 0.1124918876 - - protein binding protein, putative [Ricinus communis]
14 Hb_001545_200 0.1141004659 - - PREDICTED: uncharacterized oxidoreductase At4g09670 [Jatropha curcas]
15 Hb_000002_490 0.1154956182 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
16 Hb_000914_080 0.1168468338 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_003126_100 0.1170961058 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
18 Hb_003097_080 0.1174279094 - - hypothetical protein JCGZ_24481 [Jatropha curcas]
19 Hb_000922_140 0.1175829423 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
20 Hb_002681_170 0.1188478269 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]

Gene co-expression network

sample Hb_000076_260 Hb_000076_260 Hb_000453_140 Hb_000453_140 Hb_000076_260--Hb_000453_140 Hb_002092_100 Hb_002092_100 Hb_000076_260--Hb_002092_100 Hb_000661_020 Hb_000661_020 Hb_000076_260--Hb_000661_020 Hb_000735_100 Hb_000735_100 Hb_000076_260--Hb_000735_100 Hb_011915_010 Hb_011915_010 Hb_000076_260--Hb_011915_010 Hb_150651_030 Hb_150651_030 Hb_000076_260--Hb_150651_030 Hb_003097_080 Hb_003097_080 Hb_000453_140--Hb_003097_080 Hb_027380_030 Hb_027380_030 Hb_000453_140--Hb_027380_030 Hb_002896_060 Hb_002896_060 Hb_000453_140--Hb_002896_060 Hb_000453_140--Hb_002092_100 Hb_007456_010 Hb_007456_010 Hb_000453_140--Hb_007456_010 Hb_000156_160 Hb_000156_160 Hb_002092_100--Hb_000156_160 Hb_005053_010 Hb_005053_010 Hb_002092_100--Hb_005053_010 Hb_002805_060 Hb_002805_060 Hb_002092_100--Hb_002805_060 Hb_002092_100--Hb_027380_030 Hb_016734_090 Hb_016734_090 Hb_002092_100--Hb_016734_090 Hb_002681_170 Hb_002681_170 Hb_002092_100--Hb_002681_170 Hb_003929_140 Hb_003929_140 Hb_000661_020--Hb_003929_140 Hb_004631_190 Hb_004631_190 Hb_000661_020--Hb_004631_190 Hb_002739_130 Hb_002739_130 Hb_000661_020--Hb_002739_130 Hb_000661_020--Hb_016734_090 Hb_000922_020 Hb_000922_020 Hb_000661_020--Hb_000922_020 Hb_007929_080 Hb_007929_080 Hb_000661_020--Hb_007929_080 Hb_028872_120 Hb_028872_120 Hb_000735_100--Hb_028872_120 Hb_000025_650 Hb_000025_650 Hb_000735_100--Hb_000025_650 Hb_002249_120 Hb_002249_120 Hb_000735_100--Hb_002249_120 Hb_005408_020 Hb_005408_020 Hb_000735_100--Hb_005408_020 Hb_000735_100--Hb_000661_020 Hb_001040_040 Hb_001040_040 Hb_011915_010--Hb_001040_040 Hb_001050_010 Hb_001050_010 Hb_011915_010--Hb_001050_010 Hb_002249_160 Hb_002249_160 Hb_011915_010--Hb_002249_160 Hb_011609_170 Hb_011609_170 Hb_011915_010--Hb_011609_170 Hb_007044_040 Hb_007044_040 Hb_011915_010--Hb_007044_040 Hb_001198_150 Hb_001198_150 Hb_011915_010--Hb_001198_150 Hb_004032_410 Hb_004032_410 Hb_150651_030--Hb_004032_410 Hb_027472_120 Hb_027472_120 Hb_150651_030--Hb_027472_120 Hb_034432_030 Hb_034432_030 Hb_150651_030--Hb_034432_030 Hb_000544_010 Hb_000544_010 Hb_150651_030--Hb_000544_010 Hb_001379_110 Hb_001379_110 Hb_150651_030--Hb_001379_110 Hb_012490_060 Hb_012490_060 Hb_150651_030--Hb_012490_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.8791 14.4717 25.3094 11.2277 44.0475 20.1477
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.02289 7.71252 9.56661 11.9467 18.9732

CAGE analysis