Hb_000076_290

Information

Type -
Description -
Location Contig76: 227588-230921
Sequence    

Annotation

kegg
ID rcu:RCOM_0184440
description translation factor sui1, putative
nr
ID XP_002522857.1
description translation factor sui1, putative [Ricinus communis]
swissprot
ID P41568
description Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 PE=1 SV=2
trembl
ID B9SA38
description Translation factor sui1, putative OS=Ricinus communis GN=RCOM_0184440 PE=4 SV=1
Gene Ontology
ID GO:0003743
description protein translation factor sui1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57264: 227550-229781 , PASA_asmbl_57265: 227662-229818 , PASA_asmbl_57266: 228645-228841
cDNA
(Sanger)
(ID:Location)		 006_I08.ab1: 227681-229818 , 008_F20.ab1: 227650-229753 , 010_J12.ab1: 227844-229753 , 011_L07.ab1: 227588-229751 , 013_I09.ab1: 227734-229765 , 014_C04.ab1: 228094-229746 , 014_N16.ab1: 227658-229760 , 018_C17.ab1: 227610-229753 , 018_P20.ab1: 227617-229751 , 027_E09.ab1: 227647-229755 , 029_L12.ab1: 227631-229753 , 032_L11.ab1: 227610-229753 , 033_H11.ab1: 227658-229752 , 034_D07.ab1: 227606-229753 , 037_O17.ab1: 227845-229753 , 038_D07.ab1: 227662-229818 , 039_P01.ab1: 227579-229755 , 042_F03.ab1: 227543-229753 , 046_F01.ab1: 227681-229757 , 046_J11.ab1: 227583-229757 , 047_L02.ab1: 227605-229781 , 050_E11.ab1: 227681-229751

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000076_290 0.0 - - translation factor sui1, putative [Ricinus communis]
2 Hb_000174_200 0.0562238573 - - PREDICTED: pre-mRNA-splicing factor 38 [Jatropha curcas]
3 Hb_004032_350 0.0664188001 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
4 Hb_000640_210 0.0704622985 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
5 Hb_001439_180 0.0722250724 - - hypothetical protein POPTR_0004s13090g [Populus trichocarpa]
6 Hb_015401_020 0.0750921423 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
7 Hb_002270_010 0.0760679083 - - Chaperone protein dnaJ, putative [Ricinus communis]
8 Hb_005144_040 0.0775966708 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
9 Hb_000172_550 0.0779862804 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
10 Hb_000331_480 0.0784778419 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
11 Hb_000322_170 0.0788298734 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
12 Hb_001034_020 0.0805837478 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
13 Hb_005314_010 0.0860233312 - - nucleotide binding protein, putative [Ricinus communis]
14 Hb_001178_060 0.0873991778 - - PREDICTED: protein BUD31 homolog 2 isoform X1 [Jatropha curcas]
15 Hb_012760_200 0.0902092118 - - protein phsophatase-2a, putative [Ricinus communis]
16 Hb_013753_010 0.0902421697 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
17 Hb_183510_010 0.0909354045 - - PREDICTED: RPM1-interacting protein 4-like isoform X2 [Jatropha curcas]
18 Hb_001498_030 0.0946635519 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
19 Hb_000367_290 0.0947803243 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
20 Hb_025048_040 0.0948168377 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000076_290 Hb_000076_290 Hb_000174_200 Hb_000174_200 Hb_000076_290--Hb_000174_200 Hb_004032_350 Hb_004032_350 Hb_000076_290--Hb_004032_350 Hb_000640_210 Hb_000640_210 Hb_000076_290--Hb_000640_210 Hb_001439_180 Hb_001439_180 Hb_000076_290--Hb_001439_180 Hb_015401_020 Hb_015401_020 Hb_000076_290--Hb_015401_020 Hb_002270_010 Hb_002270_010 Hb_000076_290--Hb_002270_010 Hb_000174_200--Hb_000640_210 Hb_000174_200--Hb_004032_350 Hb_000174_200--Hb_015401_020 Hb_000322_170 Hb_000322_170 Hb_000174_200--Hb_000322_170 Hb_005144_040 Hb_005144_040 Hb_000174_200--Hb_005144_040 Hb_012760_200 Hb_012760_200 Hb_004032_350--Hb_012760_200 Hb_000152_890 Hb_000152_890 Hb_004032_350--Hb_000152_890 Hb_000367_290 Hb_000367_290 Hb_004032_350--Hb_000367_290 Hb_013753_010 Hb_013753_010 Hb_004032_350--Hb_013753_010 Hb_001034_020 Hb_001034_020 Hb_004032_350--Hb_001034_020 Hb_000640_210--Hb_000322_170 Hb_005028_010 Hb_005028_010 Hb_000640_210--Hb_005028_010 Hb_000640_210--Hb_012760_200 Hb_001178_060 Hb_001178_060 Hb_000640_210--Hb_001178_060 Hb_001439_180--Hb_001034_020 Hb_002675_190 Hb_002675_190 Hb_001439_180--Hb_002675_190 Hb_029281_010 Hb_029281_010 Hb_001439_180--Hb_029281_010 Hb_000331_480 Hb_000331_480 Hb_001439_180--Hb_000331_480 Hb_004931_040 Hb_004931_040 Hb_001439_180--Hb_004931_040 Hb_001274_020 Hb_001274_020 Hb_015401_020--Hb_001274_020 Hb_015401_020--Hb_001439_180 Hb_005314_010 Hb_005314_010 Hb_015401_020--Hb_005314_010 Hb_015401_020--Hb_002270_010 Hb_002270_010--Hb_005144_040 Hb_000172_550 Hb_000172_550 Hb_002270_010--Hb_000172_550 Hb_000735_120 Hb_000735_120 Hb_002270_010--Hb_000735_120 Hb_002270_010--Hb_001439_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6293.85 2929.49 268.523 616.669 4922.38 5467.38
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2185.97 1301.25 1914.67 1179.07 295.482

CAGE analysis