Hb_000077_020

Information

Type -
Description -
Location Contig77: 20172-24034
Sequence    

Annotation

kegg
ID rcu:RCOM_1173780
description hypothetical protein
nr
ID XP_002517893.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RVX4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1173780 PE=4 SV=1
Gene Ontology
ID GO:0004144
description o-acyltransferase wsd1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57558: 20259-23984 , PASA_asmbl_57560: 22134-22610
cDNA
(Sanger)
(ID:Location)		 035_I10.ab1: 20259-22556

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004880_020 0.0223024135 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Jatropha curcas]
3 Hb_009233_020 0.0333468795 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
4 Hb_009225_060 0.0348753133 - - PREDICTED: myosin heavy chain kinase B-like [Populus euphratica]
5 Hb_003734_070 0.0353043444 - - chlorophyll A/B binding protein, putative [Ricinus communis]
6 Hb_068580_010 0.0508786094 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X2 [Populus euphratica]
7 Hb_001507_060 0.0589446182 - - translation initiation factor eif-2b gamma subunit, putative [Ricinus communis]
8 Hb_003086_140 0.0619040554 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 6-like isoform X2 [Jatropha curcas]
9 Hb_085682_010 0.0635455051 - - -
10 Hb_004993_020 0.0654218297 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
11 Hb_002328_080 0.066698208 - - short-chain dehydrogenase, putative [Ricinus communis]
12 Hb_004837_010 0.0699184038 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
13 Hb_009588_010 0.0706383974 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
14 Hb_001295_070 0.0764032136 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
15 Hb_000844_080 0.0778211216 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
16 Hb_004807_010 0.0795033532 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
17 Hb_000731_150 0.0806304248 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
18 Hb_000418_130 0.0825567618 - - PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Jatropha curcas]
19 Hb_000557_070 0.0825631002 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
20 Hb_003913_120 0.0832678066 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]

Gene co-expression network

sample Hb_000077_020 Hb_000077_020 Hb_004880_020 Hb_004880_020 Hb_000077_020--Hb_004880_020 Hb_009233_020 Hb_009233_020 Hb_000077_020--Hb_009233_020 Hb_009225_060 Hb_009225_060 Hb_000077_020--Hb_009225_060 Hb_003734_070 Hb_003734_070 Hb_000077_020--Hb_003734_070 Hb_068580_010 Hb_068580_010 Hb_000077_020--Hb_068580_010 Hb_001507_060 Hb_001507_060 Hb_000077_020--Hb_001507_060 Hb_004880_020--Hb_009225_060 Hb_004880_020--Hb_003734_070 Hb_004880_020--Hb_009233_020 Hb_004880_020--Hb_068580_010 Hb_001426_020 Hb_001426_020 Hb_004880_020--Hb_001426_020 Hb_009233_020--Hb_009225_060 Hb_085682_010 Hb_085682_010 Hb_009233_020--Hb_085682_010 Hb_009233_020--Hb_003734_070 Hb_000329_120 Hb_000329_120 Hb_009233_020--Hb_000329_120 Hb_009225_060--Hb_003734_070 Hb_009225_060--Hb_085682_010 Hb_006588_140 Hb_006588_140 Hb_009225_060--Hb_006588_140 Hb_003734_070--Hb_068580_010 Hb_009588_010 Hb_009588_010 Hb_003734_070--Hb_009588_010 Hb_004993_020 Hb_004993_020 Hb_068580_010--Hb_004993_020 Hb_000557_070 Hb_000557_070 Hb_068580_010--Hb_000557_070 Hb_000731_150 Hb_000731_150 Hb_068580_010--Hb_000731_150 Hb_001295_070 Hb_001295_070 Hb_001507_060--Hb_001295_070 Hb_000844_080 Hb_000844_080 Hb_001507_060--Hb_000844_080 Hb_001775_020 Hb_001775_020 Hb_001507_060--Hb_001775_020 Hb_002328_080 Hb_002328_080 Hb_001507_060--Hb_002328_080 Hb_000139_170 Hb_000139_170 Hb_001507_060--Hb_000139_170 Hb_009707_020 Hb_009707_020 Hb_001507_060--Hb_009707_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0277491 15.9298 13.2346 0 0.010914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 22.6597

CAGE analysis