Hb_000077_050

Information

Type -
Description -
Location Contig77: 46115-53003
Sequence    

Annotation

kegg
ID tcc:TCM_005628
description Translation elongation factor EFG/EF2 protein isoform 1
nr
ID XP_012088262.1
description PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID Q9C641
description Elongation factor G-1, mitochondrial OS=Arabidopsis thaliana GN=MEFG1 PE=2 SV=1
trembl
ID A0A067JX54
description Elongation factor G, mitochondrial OS=Jatropha curcas GN=JCGZ_25771 PE=3 SV=1
Gene Ontology
ID GO:0005739
description elongation factor g- mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57562: 44935-45467 , PASA_asmbl_57563: 46152-53018
cDNA
(Sanger)
(ID:Location)		 039_H13.ab1: 46166-47268

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_050 0.0 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_014568_030 0.06433491 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
3 Hb_001584_110 0.0685042117 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
4 Hb_003434_060 0.0703356286 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
5 Hb_000390_060 0.0724106896 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
6 Hb_000230_330 0.0775861069 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
7 Hb_000462_150 0.0777825109 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
8 Hb_028900_020 0.0792350341 - - unnamed protein product [Coffea canephora]
9 Hb_002014_080 0.0797261965 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
10 Hb_000176_110 0.0803055096 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
11 Hb_041091_010 0.0809103826 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
12 Hb_001214_130 0.0829614541 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
13 Hb_000076_080 0.0830788658 - - PREDICTED: protein MOS2 [Jatropha curcas]
14 Hb_028639_060 0.0836856294 - - transporter, putative [Ricinus communis]
15 Hb_003602_040 0.0857361026 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
16 Hb_003352_050 0.085921624 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
17 Hb_003384_030 0.0863412608 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
18 Hb_033642_020 0.0871213418 - - hypothetical protein JCGZ_19094 [Jatropha curcas]
19 Hb_000307_200 0.0872195677 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
20 Hb_007447_010 0.0890517012 - - PREDICTED: CBS domain-containing protein CBSCBSPB3 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000077_050 Hb_000077_050 Hb_014568_030 Hb_014568_030 Hb_000077_050--Hb_014568_030 Hb_001584_110 Hb_001584_110 Hb_000077_050--Hb_001584_110 Hb_003434_060 Hb_003434_060 Hb_000077_050--Hb_003434_060 Hb_000390_060 Hb_000390_060 Hb_000077_050--Hb_000390_060 Hb_000230_330 Hb_000230_330 Hb_000077_050--Hb_000230_330 Hb_000462_150 Hb_000462_150 Hb_000077_050--Hb_000462_150 Hb_014568_030--Hb_001584_110 Hb_002014_080 Hb_002014_080 Hb_014568_030--Hb_002014_080 Hb_024714_030 Hb_024714_030 Hb_014568_030--Hb_024714_030 Hb_001855_010 Hb_001855_010 Hb_014568_030--Hb_001855_010 Hb_011282_030 Hb_011282_030 Hb_014568_030--Hb_011282_030 Hb_001584_110--Hb_000230_330 Hb_002874_070 Hb_002874_070 Hb_001584_110--Hb_002874_070 Hb_001584_110--Hb_011282_030 Hb_001584_110--Hb_000390_060 Hb_001584_110--Hb_000462_150 Hb_003434_060--Hb_000390_060 Hb_000956_030 Hb_000956_030 Hb_003434_060--Hb_000956_030 Hb_000120_500 Hb_000120_500 Hb_003434_060--Hb_000120_500 Hb_004198_010 Hb_004198_010 Hb_003434_060--Hb_004198_010 Hb_005883_050 Hb_005883_050 Hb_003434_060--Hb_005883_050 Hb_000316_030 Hb_000316_030 Hb_003434_060--Hb_000316_030 Hb_000390_060--Hb_000230_330 Hb_000390_060--Hb_000120_500 Hb_000034_050 Hb_000034_050 Hb_000390_060--Hb_000034_050 Hb_000390_060--Hb_000316_030 Hb_001504_160 Hb_001504_160 Hb_000230_330--Hb_001504_160 Hb_000230_330--Hb_000462_150 Hb_000230_330--Hb_003434_060 Hb_000076_080 Hb_000076_080 Hb_000230_330--Hb_000076_080 Hb_003384_030 Hb_003384_030 Hb_000462_150--Hb_003384_030 Hb_001969_040 Hb_001969_040 Hb_000462_150--Hb_001969_040 Hb_002818_040 Hb_002818_040 Hb_000462_150--Hb_002818_040 Hb_000001_180 Hb_000001_180 Hb_000462_150--Hb_000001_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.9365 10.9454 8.05899 9.56297 56.2168 75.4677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.1113 24.4532 30.2304 17.1943 11.5623

CAGE analysis