Hb_000077_060

Information

Type transcription factor
Description TF Family: bHLH
Location Contig77: 54476-55822
Sequence    

Annotation

kegg
ID rcu:RCOM_1174080
description DNA binding protein, putative
nr
ID XP_012088267.1
description PREDICTED: transcription factor bHLH36-like [Jatropha curcas]
swissprot
ID Q9FLI1
description Transcription factor bHLH36 OS=Arabidopsis thaliana GN=BHLH36 PE=2 SV=1
trembl
ID A0A067JJH0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25773 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh36-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_060 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH36-like [Jatropha curcas]
2 Hb_006153_080 0.2269520071 - - flavin-containing monooxygenase-related family protein [Populus trichocarpa]
3 Hb_008760_010 0.2277648928 - - berberine bridge enzyme [Hevea brasiliensis]
4 Hb_007747_180 0.2334350033 transcription factor TF Family: TCP PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like [Jatropha curcas]
5 Hb_004020_060 0.2355407488 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_005408_050 0.2460682536 - - PREDICTED: probable serine/threonine-protein kinase WNK5 [Jatropha curcas]
7 Hb_002046_070 0.2487469218 transcription factor TF Family: AUX/IAA PREDICTED: auxin-induced protein 22D-like isoform X1 [Populus euphratica]
8 Hb_004846_160 0.2514973549 - - -
9 Hb_056753_010 0.2576631852 - - PREDICTED: L-galactono-1,4-lactone dehydrogenase, mitochondrial isoform X2 [Jatropha curcas]
10 Hb_002291_010 0.2600926363 - - ring finger protein, putative [Ricinus communis]
11 Hb_000990_060 0.2606946566 - - PREDICTED: protein EMBRYONIC FLOWER 1 [Jatropha curcas]
12 Hb_007181_020 0.2640087133 - - PREDICTED: uncharacterized protein At4g04980-like [Populus euphratica]
13 Hb_001277_090 0.2668858783 - - PREDICTED: uncharacterized protein LOC105632061 [Jatropha curcas]
14 Hb_002486_010 0.2676350808 - - PREDICTED: sister chromatid cohesion 1 protein 1 [Jatropha curcas]
15 Hb_000059_010 0.267749623 - - amino acid binding protein, putative [Ricinus communis]
16 Hb_012053_060 0.2684296582 - - PREDICTED: BTB/POZ domain-containing protein At3g44820 isoform X2 [Jatropha curcas]
17 Hb_029866_030 0.2687616249 - - hypothetical protein CICLE_v10006898mg [Citrus clementina]
18 Hb_006268_020 0.2697246459 - - hypothetical protein JCGZ_10516 [Jatropha curcas]
19 Hb_000011_420 0.270269871 - - PREDICTED: GDSL esterase/lipase At1g29660-like [Citrus sinensis]
20 Hb_000239_020 0.2718742349 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]

Gene co-expression network

sample Hb_000077_060 Hb_000077_060 Hb_006153_080 Hb_006153_080 Hb_000077_060--Hb_006153_080 Hb_008760_010 Hb_008760_010 Hb_000077_060--Hb_008760_010 Hb_007747_180 Hb_007747_180 Hb_000077_060--Hb_007747_180 Hb_004020_060 Hb_004020_060 Hb_000077_060--Hb_004020_060 Hb_005408_050 Hb_005408_050 Hb_000077_060--Hb_005408_050 Hb_002046_070 Hb_002046_070 Hb_000077_060--Hb_002046_070 Hb_004679_050 Hb_004679_050 Hb_006153_080--Hb_004679_050 Hb_005542_060 Hb_005542_060 Hb_006153_080--Hb_005542_060 Hb_000340_310 Hb_000340_310 Hb_006153_080--Hb_000340_310 Hb_001277_090 Hb_001277_090 Hb_006153_080--Hb_001277_090 Hb_001096_110 Hb_001096_110 Hb_006153_080--Hb_001096_110 Hb_000130_110 Hb_000130_110 Hb_006153_080--Hb_000130_110 Hb_008760_010--Hb_000130_110 Hb_008760_010--Hb_006153_080 Hb_001195_360 Hb_001195_360 Hb_008760_010--Hb_001195_360 Hb_000856_150 Hb_000856_150 Hb_008760_010--Hb_000856_150 Hb_000239_020 Hb_000239_020 Hb_008760_010--Hb_000239_020 Hb_002783_110 Hb_002783_110 Hb_008760_010--Hb_002783_110 Hb_082182_010 Hb_082182_010 Hb_007747_180--Hb_082182_010 Hb_002486_010 Hb_002486_010 Hb_007747_180--Hb_002486_010 Hb_002291_010 Hb_002291_010 Hb_007747_180--Hb_002291_010 Hb_013766_010 Hb_013766_010 Hb_007747_180--Hb_013766_010 Hb_002805_020 Hb_002805_020 Hb_007747_180--Hb_002805_020 Hb_000297_020 Hb_000297_020 Hb_007747_180--Hb_000297_020 Hb_004020_060--Hb_007747_180 Hb_004020_060--Hb_002291_010 Hb_004020_060--Hb_002486_010 Hb_000011_420 Hb_000011_420 Hb_004020_060--Hb_000011_420 Hb_004020_060--Hb_082182_010 Hb_001387_030 Hb_001387_030 Hb_005408_050--Hb_001387_030 Hb_004846_160 Hb_004846_160 Hb_005408_050--Hb_004846_160 Hb_055101_010 Hb_055101_010 Hb_005408_050--Hb_055101_010 Hb_000226_080 Hb_000226_080 Hb_005408_050--Hb_000226_080 Hb_075807_010 Hb_075807_010 Hb_005408_050--Hb_075807_010 Hb_004032_260 Hb_004032_260 Hb_002046_070--Hb_004032_260 Hb_012053_060 Hb_012053_060 Hb_002046_070--Hb_012053_060 Hb_006573_180 Hb_006573_180 Hb_002046_070--Hb_006573_180 Hb_023732_040 Hb_023732_040 Hb_002046_070--Hb_023732_040 Hb_000990_060 Hb_000990_060 Hb_002046_070--Hb_000990_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0534408 0.317982 0.144112 0.210705 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.429648 0.193064 1.58145 0.643176 0.292659

CAGE analysis