Hb_000077_070

Information

Type -
Description -
Location Contig77: 61030-67020
Sequence    

Annotation

kegg
ID rcu:RCOM_1174220
description ATP binding protein, putative (EC:2.7.11.23)
nr
ID XP_012088269.1
description PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
swissprot
ID Q9ZVM9
description Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1
trembl
ID A0A067JMS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25775 PE=4 SV=1
Gene Ontology
ID GO:0005524
description probable serine threonine-protein kinase at1g54610

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57564: 64265-64475
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_070 0.0 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
2 Hb_000077_230 0.0687689591 - - PREDICTED: uncharacterized protein LOC105646947 [Jatropha curcas]
3 Hb_000025_360 0.0747157875 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
4 Hb_000336_140 0.0767303957 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000032_320 0.0776455308 - - protein binding protein, putative [Ricinus communis]
6 Hb_001247_070 0.0788798642 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
7 Hb_001728_100 0.0799763534 - - hypothetical protein JCGZ_03429 [Jatropha curcas]
8 Hb_001616_050 0.0824643619 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
9 Hb_000107_500 0.0830701992 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
10 Hb_156850_030 0.0841011876 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
11 Hb_000062_250 0.0846349935 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
12 Hb_001541_020 0.0864494794 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
13 Hb_022408_010 0.0864968371 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
14 Hb_000031_050 0.088296572 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
15 Hb_000169_130 0.0906207151 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
16 Hb_003777_160 0.0917374982 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
17 Hb_000291_190 0.0934060619 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
18 Hb_002188_110 0.0958836511 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
19 Hb_002636_180 0.0960758552 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
20 Hb_006847_040 0.0961018053 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000077_070 Hb_000077_070 Hb_000077_230 Hb_000077_230 Hb_000077_070--Hb_000077_230 Hb_000025_360 Hb_000025_360 Hb_000077_070--Hb_000025_360 Hb_000336_140 Hb_000336_140 Hb_000077_070--Hb_000336_140 Hb_000032_320 Hb_000032_320 Hb_000077_070--Hb_000032_320 Hb_001247_070 Hb_001247_070 Hb_000077_070--Hb_001247_070 Hb_001728_100 Hb_001728_100 Hb_000077_070--Hb_001728_100 Hb_000062_250 Hb_000062_250 Hb_000077_230--Hb_000062_250 Hb_000077_230--Hb_000025_360 Hb_000107_500 Hb_000107_500 Hb_000077_230--Hb_000107_500 Hb_000031_050 Hb_000031_050 Hb_000077_230--Hb_000031_050 Hb_000174_220 Hb_000174_220 Hb_000077_230--Hb_000174_220 Hb_045793_010 Hb_045793_010 Hb_000025_360--Hb_045793_010 Hb_002188_110 Hb_002188_110 Hb_000025_360--Hb_002188_110 Hb_000046_010 Hb_000046_010 Hb_000025_360--Hb_000046_010 Hb_001718_090 Hb_001718_090 Hb_000025_360--Hb_001718_090 Hb_183963_030 Hb_183963_030 Hb_000025_360--Hb_183963_030 Hb_000025_360--Hb_000107_500 Hb_000140_070 Hb_000140_070 Hb_000336_140--Hb_000140_070 Hb_045046_010 Hb_045046_010 Hb_000336_140--Hb_045046_010 Hb_003126_030 Hb_003126_030 Hb_000336_140--Hb_003126_030 Hb_003878_140 Hb_003878_140 Hb_000336_140--Hb_003878_140 Hb_002813_010 Hb_002813_010 Hb_000336_140--Hb_002813_010 Hb_156850_030 Hb_156850_030 Hb_000032_320--Hb_156850_030 Hb_000032_320--Hb_001728_100 Hb_002301_220 Hb_002301_220 Hb_000032_320--Hb_002301_220 Hb_001541_020 Hb_001541_020 Hb_000032_320--Hb_001541_020 Hb_022408_010 Hb_022408_010 Hb_000032_320--Hb_022408_010 Hb_006586_050 Hb_006586_050 Hb_000032_320--Hb_006586_050 Hb_000139_090 Hb_000139_090 Hb_001247_070--Hb_000139_090 Hb_001268_350 Hb_001268_350 Hb_001247_070--Hb_001268_350 Hb_124315_020 Hb_124315_020 Hb_001247_070--Hb_124315_020 Hb_001930_010 Hb_001930_010 Hb_001247_070--Hb_001930_010 Hb_001247_070--Hb_002188_110 Hb_001247_070--Hb_000174_220 Hb_001728_100--Hb_156850_030 Hb_002027_260 Hb_002027_260 Hb_001728_100--Hb_002027_260 Hb_001728_100--Hb_000107_500 Hb_004204_080 Hb_004204_080 Hb_001728_100--Hb_004204_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.7497 29.6134 8.54254 8.26803 26.8324 22.7767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.0827 9.63997 22.188 11.1378 7.36402

CAGE analysis