Hb_000077_080

Information

Type -
Description -
Location Contig77: 70764-71204
Sequence    

Annotation

kegg
ID pop:POPTR_0013s13370g
description hypothetical protein
nr
ID XP_012088272.1
description PREDICTED: uncharacterized protein LOC105646929 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID U5FWG5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s13370g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_080 0.0 - - PREDICTED: uncharacterized protein LOC105646929 [Jatropha curcas]
2 Hb_000798_060 0.109394508 transcription factor TF Family: PHD -
3 Hb_008725_250 0.1134040034 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_000703_090 0.1206070569 - - PREDICTED: 14-3-3-like protein D [Cucumis sativus]
5 Hb_005489_130 0.1213524024 - - calmodulin, putative [Ricinus communis]
6 Hb_008959_030 0.1225299865 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
7 Hb_000116_110 0.1227934435 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
8 Hb_002660_140 0.1233330613 - - hypothetical protein POPTR_0006s13060g [Populus trichocarpa]
9 Hb_004055_010 0.1237122143 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
10 Hb_015941_030 0.1252458633 - - unknown [Populus trichocarpa]
11 Hb_005333_020 0.1269101437 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
12 Hb_002400_070 0.1272497156 transcription factor TF Family: AUX/IAA PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Jatropha curcas]
13 Hb_002783_230 0.1278949719 - - neutral/alkaline invertase [Manihot esculenta]
14 Hb_002400_390 0.133174106 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
15 Hb_000392_070 0.1345943768 - - catalytic, putative [Ricinus communis]
16 Hb_006740_020 0.1352712055 - - PREDICTED: bis(5'-adenosyl)-triphosphatase [Jatropha curcas]
17 Hb_153150_010 0.1353789339 - - PREDICTED: serine/threonine-protein phosphatase PP2A-3 catalytic subunit [Eucalyptus grandis]
18 Hb_001975_070 0.1373557458 - - eukaryotic translation elongation factor 1B alpha-subunit [Hevea brasiliensis]
19 Hb_030312_040 0.1374453057 - - hypothetical protein JCGZ_04876 [Jatropha curcas]
20 Hb_005307_030 0.1384464736 - - hypothetical protein POPTR_0006s04640g [Populus trichocarpa]

Gene co-expression network

sample Hb_000077_080 Hb_000077_080 Hb_000798_060 Hb_000798_060 Hb_000077_080--Hb_000798_060 Hb_008725_250 Hb_008725_250 Hb_000077_080--Hb_008725_250 Hb_000703_090 Hb_000703_090 Hb_000077_080--Hb_000703_090 Hb_005489_130 Hb_005489_130 Hb_000077_080--Hb_005489_130 Hb_008959_030 Hb_008959_030 Hb_000077_080--Hb_008959_030 Hb_000116_110 Hb_000116_110 Hb_000077_080--Hb_000116_110 Hb_000920_040 Hb_000920_040 Hb_000798_060--Hb_000920_040 Hb_000798_060--Hb_008725_250 Hb_015941_030 Hb_015941_030 Hb_000798_060--Hb_015941_030 Hb_004055_010 Hb_004055_010 Hb_000798_060--Hb_004055_010 Hb_086063_010 Hb_086063_010 Hb_000798_060--Hb_086063_010 Hb_000032_620 Hb_000032_620 Hb_000798_060--Hb_000032_620 Hb_005147_110 Hb_005147_110 Hb_008725_250--Hb_005147_110 Hb_004310_060 Hb_004310_060 Hb_008725_250--Hb_004310_060 Hb_005914_230 Hb_005914_230 Hb_008725_250--Hb_005914_230 Hb_002249_140 Hb_002249_140 Hb_008725_250--Hb_002249_140 Hb_000359_170 Hb_000359_170 Hb_008725_250--Hb_000359_170 Hb_012305_070 Hb_012305_070 Hb_008725_250--Hb_012305_070 Hb_003494_240 Hb_003494_240 Hb_000703_090--Hb_003494_240 Hb_002215_050 Hb_002215_050 Hb_000703_090--Hb_002215_050 Hb_000703_090--Hb_015941_030 Hb_001124_210 Hb_001124_210 Hb_000703_090--Hb_001124_210 Hb_024714_030 Hb_024714_030 Hb_000703_090--Hb_024714_030 Hb_000386_040 Hb_000386_040 Hb_000703_090--Hb_000386_040 Hb_000045_130 Hb_000045_130 Hb_005489_130--Hb_000045_130 Hb_010449_020 Hb_010449_020 Hb_005489_130--Hb_010449_020 Hb_003688_100 Hb_003688_100 Hb_005489_130--Hb_003688_100 Hb_004722_060 Hb_004722_060 Hb_005489_130--Hb_004722_060 Hb_000808_040 Hb_000808_040 Hb_005489_130--Hb_000808_040 Hb_159558_030 Hb_159558_030 Hb_005489_130--Hb_159558_030 Hb_008959_030--Hb_004055_010 Hb_001655_070 Hb_001655_070 Hb_008959_030--Hb_001655_070 Hb_000483_350 Hb_000483_350 Hb_008959_030--Hb_000483_350 Hb_004109_200 Hb_004109_200 Hb_008959_030--Hb_004109_200 Hb_005928_110 Hb_005928_110 Hb_008959_030--Hb_005928_110 Hb_004221_010 Hb_004221_010 Hb_008959_030--Hb_004221_010 Hb_007643_050 Hb_007643_050 Hb_000116_110--Hb_007643_050 Hb_000116_110--Hb_012305_070 Hb_000116_110--Hb_015941_030 Hb_002475_160 Hb_002475_160 Hb_000116_110--Hb_002475_160 Hb_000236_370 Hb_000236_370 Hb_000116_110--Hb_000236_370 Hb_000265_150 Hb_000265_150 Hb_000116_110--Hb_000265_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.6805 31.3589 4.84625 14.4346 45.6689 49.9788
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.2619 31.6229 21.9335 5.84086 0.473417

CAGE analysis