Hb_000077_090

Information

Type -
Description -
Location Contig77: 73327-73842
Sequence    

Annotation

kegg
ID rcu:RCOM_1174240
description hypothetical protein
nr
ID XP_002517908.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RVY9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1174240 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007741_020 0.0865728094 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
3 Hb_000510_200 0.0953677875 - - nucleotide binding protein, putative [Ricinus communis]
4 Hb_001863_110 0.1022456301 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
5 Hb_000316_030 0.1051084581 - - zinc finger protein, putative [Ricinus communis]
6 Hb_000436_040 0.1064120471 - - PREDICTED: transportin-1 [Jatropha curcas]
7 Hb_003363_010 0.1071279069 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000567_050 0.1089842683 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]
9 Hb_000329_090 0.1093236881 - - arginase, putative [Ricinus communis]
10 Hb_000364_080 0.1123935958 - - PREDICTED: OTU domain-containing protein 3 isoform X1 [Jatropha curcas]
11 Hb_000025_110 0.1124171603 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
12 Hb_002067_020 0.1132701407 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000023_190 0.1141805619 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
14 Hb_004619_050 0.1152131341 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X2 [Jatropha curcas]
15 Hb_002174_060 0.1154221541 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
16 Hb_001609_010 0.1165397983 desease resistance Gene Name: NB-ARC PREDICTED: putative inactive disease susceptibility protein LOV1 [Jatropha curcas]
17 Hb_002716_140 0.1169553897 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
18 Hb_002493_020 0.1183253302 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
19 Hb_000429_120 0.1197383246 - - PREDICTED: DNA-directed RNA polymerase I subunit rpa1 [Jatropha curcas]
20 Hb_000345_170 0.1197926849 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000077_090 Hb_000077_090 Hb_007741_020 Hb_007741_020 Hb_000077_090--Hb_007741_020 Hb_000510_200 Hb_000510_200 Hb_000077_090--Hb_000510_200 Hb_001863_110 Hb_001863_110 Hb_000077_090--Hb_001863_110 Hb_000316_030 Hb_000316_030 Hb_000077_090--Hb_000316_030 Hb_000436_040 Hb_000436_040 Hb_000077_090--Hb_000436_040 Hb_003363_010 Hb_003363_010 Hb_000077_090--Hb_003363_010 Hb_000567_050 Hb_000567_050 Hb_007741_020--Hb_000567_050 Hb_000212_240 Hb_000212_240 Hb_007741_020--Hb_000212_240 Hb_002054_040 Hb_002054_040 Hb_007741_020--Hb_002054_040 Hb_002374_050 Hb_002374_050 Hb_007741_020--Hb_002374_050 Hb_002784_060 Hb_002784_060 Hb_007741_020--Hb_002784_060 Hb_000072_150 Hb_000072_150 Hb_000510_200--Hb_000072_150 Hb_002893_150 Hb_002893_150 Hb_000510_200--Hb_002893_150 Hb_002798_040 Hb_002798_040 Hb_000510_200--Hb_002798_040 Hb_000429_120 Hb_000429_120 Hb_000510_200--Hb_000429_120 Hb_000100_070 Hb_000100_070 Hb_000510_200--Hb_000100_070 Hb_000046_440 Hb_000046_440 Hb_000510_200--Hb_000046_440 Hb_000034_050 Hb_000034_050 Hb_001863_110--Hb_000034_050 Hb_000335_010 Hb_000335_010 Hb_001863_110--Hb_000335_010 Hb_003581_120 Hb_003581_120 Hb_001863_110--Hb_003581_120 Hb_010222_030 Hb_010222_030 Hb_001863_110--Hb_010222_030 Hb_002400_180 Hb_002400_180 Hb_001863_110--Hb_002400_180 Hb_002174_060 Hb_002174_060 Hb_001863_110--Hb_002174_060 Hb_001040_160 Hb_001040_160 Hb_000316_030--Hb_001040_160 Hb_003434_060 Hb_003434_060 Hb_000316_030--Hb_003434_060 Hb_000390_060 Hb_000390_060 Hb_000316_030--Hb_000390_060 Hb_001609_010 Hb_001609_010 Hb_000316_030--Hb_001609_010 Hb_063047_010 Hb_063047_010 Hb_000316_030--Hb_063047_010 Hb_002097_090 Hb_002097_090 Hb_000316_030--Hb_002097_090 Hb_021409_170 Hb_021409_170 Hb_000436_040--Hb_021409_170 Hb_000023_190 Hb_000023_190 Hb_000436_040--Hb_000023_190 Hb_000347_130 Hb_000347_130 Hb_000436_040--Hb_000347_130 Hb_003464_020 Hb_003464_020 Hb_000436_040--Hb_003464_020 Hb_004218_240 Hb_004218_240 Hb_000436_040--Hb_004218_240 Hb_000436_040--Hb_002893_150 Hb_003363_010--Hb_001863_110 Hb_000679_150 Hb_000679_150 Hb_003363_010--Hb_000679_150 Hb_003363_010--Hb_003434_060 Hb_003363_010--Hb_001609_010 Hb_003363_010--Hb_000316_030 Hb_003363_010--Hb_002174_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.1213 8.1173 2.57791 10.8944 14.5169 26.8009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6033 7.91412 8.02685 7.51666 12.068

CAGE analysis