Hb_000077_100

Information

Type -
Description -
Location Contig77: 78298-83264
Sequence    

Annotation

kegg
ID rcu:RCOM_1174250
description hydrolase, hydrolyzing O-glycosyl compounds, putative
nr
ID XP_012088282.1
description PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X1 [Jatropha curcas]
swissprot
ID Q7Y223
description Mannan endo-1,4-beta-mannosidase 2 OS=Arabidopsis thaliana GN=MAN2 PE=2 SV=1
trembl
ID A0A067JJP8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25784 PE=3 SV=1
Gene Ontology
ID GO:0004553
description mannan endo- -beta-mannosidase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57567: 77915-78084 , PASA_asmbl_57569: 78475-78776
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_100 0.0 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X1 [Jatropha curcas]
2 Hb_030565_100 0.0843304208 - - serine hydroxymethyltransferase, putative [Ricinus communis]
3 Hb_000236_180 0.1079295788 - - serine hydroxymethyltransferase, putative [Ricinus communis]
4 Hb_029223_040 0.1190673615 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
5 Hb_000820_110 0.1197461654 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
6 Hb_000193_210 0.1219880835 - - PREDICTED: LOW QUALITY PROTEIN: galactoside 2-alpha-L-fucosyltransferase [Jatropha curcas]
7 Hb_000580_110 0.12340778 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
8 Hb_000300_420 0.1273879367 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
9 Hb_000297_140 0.1339744478 - - hypothetical protein RCOM_0293450 [Ricinus communis]
10 Hb_001329_180 0.1386583421 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
11 Hb_000959_130 0.1389762801 - - organic anion transporter, putative [Ricinus communis]
12 Hb_000417_380 0.1396530365 - - SecY protein transport family protein [Theobroma cacao]
13 Hb_006615_230 0.1404863713 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
14 Hb_174541_030 0.1409169161 - - Cytochrome P450, family 98, subfamily A, polypeptide 3 [Theobroma cacao]
15 Hb_000806_130 0.1415848025 - - Adenosine kinase 2 [Theobroma cacao]
16 Hb_000463_120 0.1437250702 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
17 Hb_001119_070 0.1451932736 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
18 Hb_000108_180 0.1452360701 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
19 Hb_002495_030 0.1483834365 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
20 Hb_000246_130 0.153444265 - - tubulin alpha chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_000077_100 Hb_000077_100 Hb_030565_100 Hb_030565_100 Hb_000077_100--Hb_030565_100 Hb_000236_180 Hb_000236_180 Hb_000077_100--Hb_000236_180 Hb_029223_040 Hb_029223_040 Hb_000077_100--Hb_029223_040 Hb_000820_110 Hb_000820_110 Hb_000077_100--Hb_000820_110 Hb_000193_210 Hb_000193_210 Hb_000077_100--Hb_000193_210 Hb_000580_110 Hb_000580_110 Hb_000077_100--Hb_000580_110 Hb_030565_100--Hb_029223_040 Hb_030565_100--Hb_000236_180 Hb_174541_030 Hb_174541_030 Hb_030565_100--Hb_174541_030 Hb_003470_110 Hb_003470_110 Hb_030565_100--Hb_003470_110 Hb_000297_140 Hb_000297_140 Hb_030565_100--Hb_000297_140 Hb_000236_180--Hb_000580_110 Hb_000236_180--Hb_003470_110 Hb_000417_380 Hb_000417_380 Hb_000236_180--Hb_000417_380 Hb_006615_230 Hb_006615_230 Hb_000236_180--Hb_006615_230 Hb_029223_040--Hb_000236_180 Hb_134014_010 Hb_134014_010 Hb_029223_040--Hb_134014_010 Hb_029223_040--Hb_003470_110 Hb_000806_130 Hb_000806_130 Hb_029223_040--Hb_000806_130 Hb_000820_110--Hb_000297_140 Hb_000820_110--Hb_000193_210 Hb_019516_070 Hb_019516_070 Hb_000820_110--Hb_019516_070 Hb_019516_060 Hb_019516_060 Hb_000820_110--Hb_019516_060 Hb_006750_010 Hb_006750_010 Hb_000820_110--Hb_006750_010 Hb_003177_040 Hb_003177_040 Hb_000193_210--Hb_003177_040 Hb_001493_060 Hb_001493_060 Hb_000193_210--Hb_001493_060 Hb_000108_180 Hb_000108_180 Hb_000193_210--Hb_000108_180 Hb_003462_040 Hb_003462_040 Hb_000193_210--Hb_003462_040 Hb_000580_110--Hb_000417_380 Hb_002495_030 Hb_002495_030 Hb_000580_110--Hb_002495_030 Hb_000077_310 Hb_000077_310 Hb_000580_110--Hb_000077_310 Hb_001195_380 Hb_001195_380 Hb_000580_110--Hb_001195_380 Hb_000580_110--Hb_001493_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.7508 2.04174 8.57453 40.79 1.49125 1.41932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.742077 1.10293 1.20207 7.34435 18.9307

CAGE analysis