Hb_000077_150

Information

Type -
Description -
Location Contig77: 123469-130224
Sequence    

Annotation

kegg
ID rcu:RCOM_1174760
description Riboflavin synthase alpha chain, putative
nr
ID XP_012088288.1
description PREDICTED: riboflavin synthase [Jatropha curcas]
swissprot
ID Q9Y7P0
description Riboflavin synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rib5 PE=1 SV=1
trembl
ID A0A067JJQ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25789 PE=4 SV=1
Gene Ontology
ID GO:0009507
description riboflavin synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57586: 123699-130260
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_150 0.0 - - PREDICTED: riboflavin synthase [Jatropha curcas]
2 Hb_004644_030 0.0611242984 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
3 Hb_002762_110 0.0699228177 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001214_050 0.0789506958 - - PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]
5 Hb_003106_190 0.0849497123 - - Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
6 Hb_002078_340 0.0855300399 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
7 Hb_002811_010 0.0876176722 - - cysteine synthase, putative [Ricinus communis]
8 Hb_000622_290 0.0882896427 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
9 Hb_003053_110 0.0912347939 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
10 Hb_000107_430 0.0928650406 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
11 Hb_008147_080 0.0951854654 - - PREDICTED: uncharacterized protein LOC105646805 isoform X2 [Jatropha curcas]
12 Hb_000613_110 0.0961330489 - - PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]
13 Hb_001449_070 0.0964310078 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000116_130 0.0966074927 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
15 Hb_000914_100 0.1001121837 - - unknown [Glycine max]
16 Hb_001138_060 0.1002684146 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
17 Hb_005731_160 0.1007788653 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_001195_770 0.1009541866 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
19 Hb_008705_020 0.101352235 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
20 Hb_001824_090 0.101696794 - - -

Gene co-expression network

sample Hb_000077_150 Hb_000077_150 Hb_004644_030 Hb_004644_030 Hb_000077_150--Hb_004644_030 Hb_002762_110 Hb_002762_110 Hb_000077_150--Hb_002762_110 Hb_001214_050 Hb_001214_050 Hb_000077_150--Hb_001214_050 Hb_003106_190 Hb_003106_190 Hb_000077_150--Hb_003106_190 Hb_002078_340 Hb_002078_340 Hb_000077_150--Hb_002078_340 Hb_002811_010 Hb_002811_010 Hb_000077_150--Hb_002811_010 Hb_004644_030--Hb_002762_110 Hb_000622_290 Hb_000622_290 Hb_004644_030--Hb_000622_290 Hb_008147_080 Hb_008147_080 Hb_004644_030--Hb_008147_080 Hb_003053_110 Hb_003053_110 Hb_004644_030--Hb_003053_110 Hb_001578_020 Hb_001578_020 Hb_004644_030--Hb_001578_020 Hb_002762_110--Hb_000622_290 Hb_000107_430 Hb_000107_430 Hb_002762_110--Hb_000107_430 Hb_002762_110--Hb_003053_110 Hb_002762_110--Hb_001214_050 Hb_009778_060 Hb_009778_060 Hb_001214_050--Hb_009778_060 Hb_001723_060 Hb_001723_060 Hb_001214_050--Hb_001723_060 Hb_000032_500 Hb_000032_500 Hb_001214_050--Hb_000032_500 Hb_001195_770 Hb_001195_770 Hb_001214_050--Hb_001195_770 Hb_003106_190--Hb_002811_010 Hb_000613_110 Hb_000613_110 Hb_003106_190--Hb_000613_110 Hb_000359_210 Hb_000359_210 Hb_003106_190--Hb_000359_210 Hb_003994_110 Hb_003994_110 Hb_003106_190--Hb_003994_110 Hb_000684_210 Hb_000684_210 Hb_003106_190--Hb_000684_210 Hb_000046_540 Hb_000046_540 Hb_002078_340--Hb_000046_540 Hb_000482_040 Hb_000482_040 Hb_002078_340--Hb_000482_040 Hb_012150_030 Hb_012150_030 Hb_002078_340--Hb_012150_030 Hb_003153_010 Hb_003153_010 Hb_002078_340--Hb_003153_010 Hb_003376_230 Hb_003376_230 Hb_002078_340--Hb_003376_230 Hb_000364_050 Hb_000364_050 Hb_002078_340--Hb_000364_050 Hb_005731_160 Hb_005731_160 Hb_002811_010--Hb_005731_160 Hb_055619_010 Hb_055619_010 Hb_002811_010--Hb_055619_010 Hb_002811_010--Hb_000613_110 Hb_000120_290 Hb_000120_290 Hb_002811_010--Hb_000120_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.39702 5.09952 10.3084 13.5419 5.9447 5.93618
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.48459 12.6838 8.57089 11.0601 26.749

CAGE analysis