Hb_000077_180

Information

Type -
Description -
Location Contig77: 142501-143487
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0044699
description thioredoxin m -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57589: 142577-164557 , PASA_asmbl_57590: 142579-164336
cDNA
(Sanger)
(ID:Location)		 053_I19.ab1: 142577-163796

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_180 0.0 - - -
2 Hb_000377_120 0.082210453 - - PREDICTED: acyl carrier protein 3, mitochondrial isoform X2 [Jatropha curcas]
3 Hb_001410_060 0.0950923517 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
4 Hb_017491_020 0.0964133025 - - hypothetical protein B456_011G056700 [Gossypium raimondii]
5 Hb_005460_060 0.0984109767 - - PREDICTED: proteasome assembly chaperone 2 [Jatropha curcas]
6 Hb_000110_120 0.0984986448 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
7 Hb_000009_290 0.1034113895 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
8 Hb_186982_040 0.1039690384 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
9 Hb_000136_350 0.1043045893 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
10 Hb_002301_160 0.1048552231 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
11 Hb_005306_070 0.1067733418 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
12 Hb_098315_020 0.1134589361 - - hypothetical protein M569_15712 [Genlisea aurea]
13 Hb_002042_150 0.1154152851 - - PREDICTED: signal peptidase complex subunit 3B [Jatropha curcas]
14 Hb_045003_010 0.1162946117 - - Stomatin-1, putative [Ricinus communis]
15 Hb_002060_010 0.116738069 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
16 Hb_000946_090 0.1175725427 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
17 Hb_007441_240 0.119551277 - - ethphon-induced protein [Hevea brasiliensis]
18 Hb_000419_020 0.1195537364 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_004109_340 0.1201664028 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
20 Hb_000163_050 0.1204327697 - - SPLICEOSOMAL protein U1A [Populus trichocarpa]

Gene co-expression network

sample Hb_000077_180 Hb_000077_180 Hb_000377_120 Hb_000377_120 Hb_000077_180--Hb_000377_120 Hb_001410_060 Hb_001410_060 Hb_000077_180--Hb_001410_060 Hb_017491_020 Hb_017491_020 Hb_000077_180--Hb_017491_020 Hb_005460_060 Hb_005460_060 Hb_000077_180--Hb_005460_060 Hb_000110_120 Hb_000110_120 Hb_000077_180--Hb_000110_120 Hb_000009_290 Hb_000009_290 Hb_000077_180--Hb_000009_290 Hb_000377_120--Hb_001410_060 Hb_000136_350 Hb_000136_350 Hb_000377_120--Hb_000136_350 Hb_000116_040 Hb_000116_040 Hb_000377_120--Hb_000116_040 Hb_000922_040 Hb_000922_040 Hb_000377_120--Hb_000922_040 Hb_186982_040 Hb_186982_040 Hb_000377_120--Hb_186982_040 Hb_000563_200 Hb_000563_200 Hb_001410_060--Hb_000563_200 Hb_001410_060--Hb_000922_040 Hb_003880_040 Hb_003880_040 Hb_001410_060--Hb_003880_040 Hb_005306_070 Hb_005306_070 Hb_001410_060--Hb_005306_070 Hb_005269_080 Hb_005269_080 Hb_001410_060--Hb_005269_080 Hb_017491_020--Hb_000136_350 Hb_017491_020--Hb_186982_040 Hb_017491_020--Hb_000377_120 Hb_000163_050 Hb_000163_050 Hb_017491_020--Hb_000163_050 Hb_000210_060 Hb_000210_060 Hb_017491_020--Hb_000210_060 Hb_005460_060--Hb_000110_120 Hb_004984_030 Hb_004984_030 Hb_005460_060--Hb_004984_030 Hb_098315_020 Hb_098315_020 Hb_005460_060--Hb_098315_020 Hb_002060_010 Hb_002060_010 Hb_005460_060--Hb_002060_010 Hb_000946_090 Hb_000946_090 Hb_005460_060--Hb_000946_090 Hb_002301_160 Hb_002301_160 Hb_000110_120--Hb_002301_160 Hb_012305_130 Hb_012305_130 Hb_000110_120--Hb_012305_130 Hb_000110_120--Hb_000009_290 Hb_004627_030 Hb_004627_030 Hb_000110_120--Hb_004627_030 Hb_000009_290--Hb_002301_160 Hb_000849_130 Hb_000849_130 Hb_000009_290--Hb_000849_130 Hb_000327_380 Hb_000327_380 Hb_000009_290--Hb_000327_380 Hb_002303_060 Hb_002303_060 Hb_000009_290--Hb_002303_060 Hb_002045_070 Hb_002045_070 Hb_000009_290--Hb_002045_070 Hb_000009_290--Hb_001410_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.13314 14.9043 28.6848 52.2575 7.56643 16.0666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.8076 67.994 20.8278 34.276 19.0687

CAGE analysis