Hb_000077_240

Information

Type -
Description -
Location Contig77: 209120-210271
Sequence    

Annotation

kegg
ID pvu:PHAVU_011G114500g
description hypothetical protein
nr
ID XP_007132667.1
description hypothetical protein PHAVU_011G114500g, partial [Phaseolus vulgaris]
swissprot
ID -
description -
trembl
ID V7AKN7
description Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_011G114500g PE=4 SV=1
Gene Ontology
ID GO:0016020
description hypothetical protein PHAVU_011G114500g, partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 051_L21.ab1: 210022-210332

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_240 0.0 - - hypothetical protein PHAVU_011G114500g, partial [Phaseolus vulgaris]
2 Hb_003398_030 0.0432149923 - - PREDICTED: uncharacterized protein LOC104583892 [Brachypodium distachyon]
3 Hb_006907_120 0.163608797 - - PREDICTED: uncharacterized protein LOC103327233 [Prunus mume]
4 Hb_111347_010 0.1701760374 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
5 Hb_128051_010 0.248703294 - - -
6 Hb_109268_010 0.2586171876 - - PREDICTED: uncharacterized protein LOC105650977 [Jatropha curcas]
7 Hb_007105_010 0.2635584196 - - PREDICTED: uncharacterized protein LOC103455579 [Malus domestica]
8 Hb_008289_050 0.2658889609 - - hypothetical protein B456_001G045900 [Gossypium raimondii]
9 Hb_005779_050 0.2830772778 - - hypothetical protein JCGZ_14616 [Jatropha curcas]
10 Hb_001022_040 0.2875338491 - - PREDICTED: uncharacterized protein LOC105634753 [Jatropha curcas]
11 Hb_007951_130 0.2910921372 desease resistance Gene Name: UBN2_3 JHL25H03.6 [Jatropha curcas]
12 Hb_010288_040 0.292459918 - - PREDICTED: transmembrane protein 205-like [Eucalyptus grandis]
13 Hb_002180_010 0.3036696792 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_000186_210 0.3114403299 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
15 Hb_001022_060 0.3131281825 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
16 Hb_001720_060 0.3152130888 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
17 Hb_003209_050 0.3181599455 - - hypothetical protein JCGZ_15683 [Jatropha curcas]
18 Hb_001863_440 0.3182146756 - - Nodulin-26, putative [Ricinus communis]
19 Hb_003158_020 0.3215120263 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
20 Hb_007451_060 0.3233472537 - - BAHD family acyltransferase, clade V, putative [Theobroma cacao]

Gene co-expression network

sample Hb_000077_240 Hb_000077_240 Hb_003398_030 Hb_003398_030 Hb_000077_240--Hb_003398_030 Hb_006907_120 Hb_006907_120 Hb_000077_240--Hb_006907_120 Hb_111347_010 Hb_111347_010 Hb_000077_240--Hb_111347_010 Hb_128051_010 Hb_128051_010 Hb_000077_240--Hb_128051_010 Hb_109268_010 Hb_109268_010 Hb_000077_240--Hb_109268_010 Hb_007105_010 Hb_007105_010 Hb_000077_240--Hb_007105_010 Hb_003398_030--Hb_111347_010 Hb_003398_030--Hb_006907_120 Hb_008289_050 Hb_008289_050 Hb_003398_030--Hb_008289_050 Hb_003398_030--Hb_128051_010 Hb_003398_030--Hb_007105_010 Hb_006907_120--Hb_007105_010 Hb_001189_060 Hb_001189_060 Hb_006907_120--Hb_001189_060 Hb_000186_210 Hb_000186_210 Hb_006907_120--Hb_000186_210 Hb_010288_040 Hb_010288_040 Hb_006907_120--Hb_010288_040 Hb_003158_020 Hb_003158_020 Hb_111347_010--Hb_003158_020 Hb_001022_040 Hb_001022_040 Hb_111347_010--Hb_001022_040 Hb_111347_010--Hb_128051_010 Hb_000853_130 Hb_000853_130 Hb_111347_010--Hb_000853_130 Hb_128051_010--Hb_109268_010 Hb_001022_060 Hb_001022_060 Hb_128051_010--Hb_001022_060 Hb_003209_050 Hb_003209_050 Hb_128051_010--Hb_003209_050 Hb_139138_010 Hb_139138_010 Hb_128051_010--Hb_139138_010 Hb_109268_010--Hb_001022_060 Hb_005779_050 Hb_005779_050 Hb_109268_010--Hb_005779_050 Hb_096224_020 Hb_096224_020 Hb_109268_010--Hb_096224_020 Hb_109268_010--Hb_003398_030 Hb_007105_010--Hb_001189_060 Hb_007105_010--Hb_010288_040 Hb_007105_010--Hb_005779_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 9.23077 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.66865 11.196 0 3.43951 0

CAGE analysis