Hb_000077_300

Information

Type -
Description -
Location Contig77: 263644-266157
Sequence    

Annotation

kegg
ID rcu:RCOM_1175460
description Beta-expansin 3 precursor, putative
nr
ID XP_012088304.1
description PREDICTED: expansin-B3-like [Jatropha curcas]
swissprot
ID Q9M0I2
description Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 SV=2
trembl
ID A0A067JMV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25805 PE=3 SV=1
Gene Ontology
ID GO:0005576
description expansin-b3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57608: 263590-266168
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_300 0.0 - - PREDICTED: expansin-B3-like [Jatropha curcas]
2 Hb_002757_010 0.0484465409 - - hypothetical protein POPTR_0013s10580g [Populus trichocarpa]
3 Hb_002700_030 0.0545658882 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
4 Hb_003902_070 0.0772621192 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001310_060 0.0907524217 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
6 Hb_080147_070 0.0973367087 - - Rop5 [Hevea brasiliensis]
7 Hb_000205_180 0.0982552446 - - lipoxygenase, putative [Ricinus communis]
8 Hb_000359_180 0.0991070658 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001454_270 0.1017547144 - - PREDICTED: condensin-2 complex subunit D3 isoform X2 [Jatropha curcas]
10 Hb_001284_070 0.1031759471 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005305_160 0.1100731703 - - conserved hypothetical protein [Ricinus communis]
12 Hb_062807_010 0.1104411781 - - hypothetical protein JCGZ_15896 [Jatropha curcas]
13 Hb_001369_550 0.1108133316 - - 21 kDa protein precursor, putative [Ricinus communis]
14 Hb_005116_120 0.1115227274 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
15 Hb_000030_080 0.1125106528 - - PREDICTED: uncharacterized protein LOC105632640 [Jatropha curcas]
16 Hb_000261_550 0.113118951 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
17 Hb_001999_160 0.1163867315 - - hypothetical protein JCGZ_08488 [Jatropha curcas]
18 Hb_002081_060 0.1163899798 - - cyclin d, putative [Ricinus communis]
19 Hb_003626_020 0.1179745723 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
20 Hb_005542_150 0.1200657412 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]

Gene co-expression network

sample Hb_000077_300 Hb_000077_300 Hb_002757_010 Hb_002757_010 Hb_000077_300--Hb_002757_010 Hb_002700_030 Hb_002700_030 Hb_000077_300--Hb_002700_030 Hb_003902_070 Hb_003902_070 Hb_000077_300--Hb_003902_070 Hb_001310_060 Hb_001310_060 Hb_000077_300--Hb_001310_060 Hb_080147_070 Hb_080147_070 Hb_000077_300--Hb_080147_070 Hb_000205_180 Hb_000205_180 Hb_000077_300--Hb_000205_180 Hb_002757_010--Hb_002700_030 Hb_002757_010--Hb_003902_070 Hb_002757_010--Hb_000205_180 Hb_062807_010 Hb_062807_010 Hb_002757_010--Hb_062807_010 Hb_005116_120 Hb_005116_120 Hb_002757_010--Hb_005116_120 Hb_002700_030--Hb_080147_070 Hb_001284_070 Hb_001284_070 Hb_002700_030--Hb_001284_070 Hb_002700_030--Hb_001310_060 Hb_002700_030--Hb_003902_070 Hb_000030_080 Hb_000030_080 Hb_003902_070--Hb_000030_080 Hb_004592_030 Hb_004592_030 Hb_003902_070--Hb_004592_030 Hb_000261_550 Hb_000261_550 Hb_003902_070--Hb_000261_550 Hb_001454_270 Hb_001454_270 Hb_003902_070--Hb_001454_270 Hb_001310_060--Hb_001284_070 Hb_001310_060--Hb_080147_070 Hb_004607_020 Hb_004607_020 Hb_001310_060--Hb_004607_020 Hb_001310_060--Hb_000205_180 Hb_080147_070--Hb_001284_070 Hb_000260_670 Hb_000260_670 Hb_080147_070--Hb_000260_670 Hb_001369_550 Hb_001369_550 Hb_080147_070--Hb_001369_550 Hb_080147_070--Hb_004607_020 Hb_003626_020 Hb_003626_020 Hb_000205_180--Hb_003626_020 Hb_000205_180--Hb_001369_550 Hb_000205_180--Hb_001284_070 Hb_000205_180--Hb_002700_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0767131 0.664095 30.1498 15.7859 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 6.86564 6.59326

CAGE analysis