Hb_000077_370

Information

Type -
Description -
Location Contig77: 287250-290336
Sequence    

Annotation

kegg
ID rcu:RCOM_1175540
description pre-mRNA splicing factor, putative
nr
ID XP_012088308.1
description PREDICTED: protein STABILIZED1 [Jatropha curcas]
swissprot
ID Q9ZT71
description Protein STABILIZED1 OS=Arabidopsis thaliana GN=STA1 PE=1 SV=1
trembl
ID A0A067JJS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25809 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein stabilized1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57616: 286345-286694
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_370 0.0 - - PREDICTED: protein STABILIZED1 [Jatropha curcas]
2 Hb_000616_020 0.0740307234 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_001247_070 0.0773417452 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
4 Hb_010578_060 0.086314151 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
5 Hb_001268_350 0.0921838336 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]
6 Hb_000390_070 0.0921943585 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
7 Hb_001930_010 0.0957430274 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
8 Hb_124315_020 0.0984833166 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_002188_110 0.0999180649 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
10 Hb_000327_340 0.100294504 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
11 Hb_004718_010 0.1006596263 - - PREDICTED: uncharacterized protein LOC105638290 [Jatropha curcas]
12 Hb_006649_060 0.103954299 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000959_040 0.1041245663 - - PREDICTED: uncharacterized protein LOC105636570 [Jatropha curcas]
14 Hb_000011_080 0.1083287049 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
15 Hb_001967_030 0.1085805384 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
16 Hb_001439_140 0.1087902647 - - pattern formation protein, putative [Ricinus communis]
17 Hb_002986_130 0.1095683304 - - PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Jatropha curcas]
18 Hb_017075_010 0.1107699853 transcription factor TF Family: SNF2 PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 [Jatropha curcas]
19 Hb_007757_110 0.1108464606 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
20 Hb_001437_180 0.111094271 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000077_370 Hb_000077_370 Hb_000616_020 Hb_000616_020 Hb_000077_370--Hb_000616_020 Hb_001247_070 Hb_001247_070 Hb_000077_370--Hb_001247_070 Hb_010578_060 Hb_010578_060 Hb_000077_370--Hb_010578_060 Hb_001268_350 Hb_001268_350 Hb_000077_370--Hb_001268_350 Hb_000390_070 Hb_000390_070 Hb_000077_370--Hb_000390_070 Hb_001930_010 Hb_001930_010 Hb_000077_370--Hb_001930_010 Hb_000327_340 Hb_000327_340 Hb_000616_020--Hb_000327_340 Hb_000616_020--Hb_001247_070 Hb_000616_020--Hb_001268_350 Hb_000270_760 Hb_000270_760 Hb_000616_020--Hb_000270_760 Hb_006847_040 Hb_006847_040 Hb_000616_020--Hb_006847_040 Hb_000139_090 Hb_000139_090 Hb_001247_070--Hb_000139_090 Hb_001247_070--Hb_001268_350 Hb_124315_020 Hb_124315_020 Hb_001247_070--Hb_124315_020 Hb_001247_070--Hb_001930_010 Hb_002188_110 Hb_002188_110 Hb_001247_070--Hb_002188_110 Hb_000174_220 Hb_000174_220 Hb_001247_070--Hb_000174_220 Hb_004718_010 Hb_004718_010 Hb_010578_060--Hb_004718_010 Hb_000959_040 Hb_000959_040 Hb_010578_060--Hb_000959_040 Hb_183963_030 Hb_183963_030 Hb_010578_060--Hb_183963_030 Hb_010578_060--Hb_002188_110 Hb_010578_060--Hb_001247_070 Hb_004543_030 Hb_004543_030 Hb_010578_060--Hb_004543_030 Hb_001268_350--Hb_004718_010 Hb_000035_290 Hb_000035_290 Hb_001268_350--Hb_000035_290 Hb_002784_110 Hb_002784_110 Hb_001268_350--Hb_002784_110 Hb_005699_090 Hb_005699_090 Hb_001268_350--Hb_005699_090 Hb_014267_010 Hb_014267_010 Hb_001268_350--Hb_014267_010 Hb_000627_080 Hb_000627_080 Hb_000390_070--Hb_000627_080 Hb_007757_110 Hb_007757_110 Hb_000390_070--Hb_007757_110 Hb_000390_070--Hb_001930_010 Hb_007586_030 Hb_007586_030 Hb_000390_070--Hb_007586_030 Hb_000244_250 Hb_000244_250 Hb_000390_070--Hb_000244_250 Hb_004055_040 Hb_004055_040 Hb_000390_070--Hb_004055_040 Hb_003216_080 Hb_003216_080 Hb_001930_010--Hb_003216_080 Hb_000313_060 Hb_000313_060 Hb_001930_010--Hb_000313_060 Hb_001930_010--Hb_124315_020 Hb_000514_060 Hb_000514_060 Hb_001930_010--Hb_000514_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
84.9535 110.499 11.2399 20.5126 92.3267 102.663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.0973 32.5077 86.3017 66.8865 40.7989

CAGE analysis