Hb_000077_390

Information

Type transcription factor
Description TF Family: ERF
Location Contig77: 296035-297438
Sequence    

Annotation

kegg
ID pop:POPTR_0019s13330g
description hypothetical protein
nr
ID XP_006371578.1
description hypothetical protein POPTR_0019s13330g [Populus trichocarpa]
swissprot
ID Q9SKT1
description Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1
trembl
ID B9N2B5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s13330g PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor erf054-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57623: 297620-297825
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_390 0.0 transcription factor TF Family: ERF hypothetical protein POPTR_0019s13330g [Populus trichocarpa]
2 Hb_001484_020 0.1101557983 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
3 Hb_003077_050 0.1207695415 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
4 Hb_000976_280 0.1328286056 - - PREDICTED: uncharacterized serine-rich protein C215.13-like [Jatropha curcas]
5 Hb_127311_010 0.1418107256 - - hypothetical protein JCGZ_07497 [Jatropha curcas]
6 Hb_013241_010 0.1438896134 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
7 Hb_000042_330 0.1455332987 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000069_330 0.1468173733 - - protein with unknown function [Ricinus communis]
9 Hb_010661_010 0.1478248302 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
10 Hb_011631_010 0.1480981887 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
11 Hb_001699_230 0.1510471572 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
12 Hb_004108_240 0.1511742732 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
13 Hb_001376_010 0.1512161923 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
14 Hb_000638_280 0.1526557252 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
15 Hb_048755_020 0.1531180586 - - hypothetical protein JCGZ_09860 [Jatropha curcas]
16 Hb_000364_040 0.1535293321 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF010-like [Jatropha curcas]
17 Hb_012107_010 0.1538972322 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
18 Hb_000019_040 0.1541007099 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
19 Hb_002774_200 0.1542006512 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
20 Hb_000045_260 0.1597018593 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_000077_390 Hb_000077_390 Hb_001484_020 Hb_001484_020 Hb_000077_390--Hb_001484_020 Hb_003077_050 Hb_003077_050 Hb_000077_390--Hb_003077_050 Hb_000976_280 Hb_000976_280 Hb_000077_390--Hb_000976_280 Hb_127311_010 Hb_127311_010 Hb_000077_390--Hb_127311_010 Hb_013241_010 Hb_013241_010 Hb_000077_390--Hb_013241_010 Hb_000042_330 Hb_000042_330 Hb_000077_390--Hb_000042_330 Hb_001484_020--Hb_000976_280 Hb_001484_020--Hb_003077_050 Hb_011631_010 Hb_011631_010 Hb_001484_020--Hb_011631_010 Hb_000019_040 Hb_000019_040 Hb_001484_020--Hb_000019_040 Hb_001484_020--Hb_013241_010 Hb_000069_330 Hb_000069_330 Hb_003077_050--Hb_000069_330 Hb_004117_170 Hb_004117_170 Hb_003077_050--Hb_004117_170 Hb_002685_200 Hb_002685_200 Hb_003077_050--Hb_002685_200 Hb_000186_200 Hb_000186_200 Hb_003077_050--Hb_000186_200 Hb_000976_280--Hb_000019_040 Hb_006788_140 Hb_006788_140 Hb_000976_280--Hb_006788_140 Hb_003605_240 Hb_003605_240 Hb_000976_280--Hb_003605_240 Hb_000976_280--Hb_013241_010 Hb_010661_010 Hb_010661_010 Hb_127311_010--Hb_010661_010 Hb_000252_210 Hb_000252_210 Hb_127311_010--Hb_000252_210 Hb_001856_220 Hb_001856_220 Hb_127311_010--Hb_001856_220 Hb_002071_050 Hb_002071_050 Hb_127311_010--Hb_002071_050 Hb_127311_010--Hb_013241_010 Hb_000015_170 Hb_000015_170 Hb_127311_010--Hb_000015_170 Hb_000432_090 Hb_000432_090 Hb_013241_010--Hb_000432_090 Hb_084490_010 Hb_084490_010 Hb_013241_010--Hb_084490_010 Hb_000815_240 Hb_000815_240 Hb_013241_010--Hb_000815_240 Hb_003925_040 Hb_003925_040 Hb_013241_010--Hb_003925_040 Hb_012239_020 Hb_012239_020 Hb_013241_010--Hb_012239_020 Hb_000042_330--Hb_010661_010 Hb_000042_330--Hb_127311_010 Hb_001500_030 Hb_001500_030 Hb_000042_330--Hb_001500_030 Hb_000042_330--Hb_013241_010 Hb_000656_390 Hb_000656_390 Hb_000042_330--Hb_000656_390 Hb_023344_110 Hb_023344_110 Hb_000042_330--Hb_023344_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.22028 13.3872 5.8564 4.6697 0.449728 1.36692
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.1016 1.83001 4.22431 2.03454 3.7068

CAGE analysis