Hb_000077_410

Information

Type -
Description -
Location Contig77: 311535-314365
Sequence    

Annotation

kegg
ID rcu:RCOM_1175680
description protein with unknown function
nr
ID XP_002517951.1
description protein with unknown function [Ricinus communis]
swissprot
ID P53990
description IST1 homolog OS=Homo sapiens GN=IST1 PE=1 SV=1
trembl
ID B9RW32
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1175680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57626: 311787-312055
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_410 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_003020_310 0.1224256279 - - glycosyltransferase, putative [Ricinus communis]
3 Hb_000178_110 0.1486437189 - - conserved hypothetical protein [Ricinus communis]
4 Hb_012725_110 0.1526712695 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
5 Hb_002260_090 0.1567230001 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
6 Hb_000836_500 0.1572109116 - - Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]
7 Hb_002291_030 0.1585786419 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
8 Hb_000699_120 0.1612997175 - - DNA-binding family protein [Populus trichocarpa]
9 Hb_054865_130 0.1621888703 - - acyltransferase, putative [Ricinus communis]
10 Hb_003052_040 0.1658534066 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001396_190 0.1678109763 - - PREDICTED: uncharacterized protein LOC105123025 [Populus euphratica]
12 Hb_078633_010 0.1695047703 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
13 Hb_007120_070 0.1695473703 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
14 Hb_002928_110 0.1697555624 - - PREDICTED: uncharacterized protein LOC105635235 [Jatropha curcas]
15 Hb_012366_020 0.1700601865 - - unnamed protein product [Vitis vinifera]
16 Hb_004048_050 0.1723847753 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
17 Hb_092706_020 0.1779313957 - - PREDICTED: uncharacterized protein LOC105637876 isoform X1 [Jatropha curcas]
18 Hb_005615_070 0.1789861887 - - Rab7 [Hevea brasiliensis]
19 Hb_001268_080 0.1799200174 - - catalytic, putative [Ricinus communis]
20 Hb_002685_090 0.1802190717 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]

Gene co-expression network

sample Hb_000077_410 Hb_000077_410 Hb_003020_310 Hb_003020_310 Hb_000077_410--Hb_003020_310 Hb_000178_110 Hb_000178_110 Hb_000077_410--Hb_000178_110 Hb_012725_110 Hb_012725_110 Hb_000077_410--Hb_012725_110 Hb_002260_090 Hb_002260_090 Hb_000077_410--Hb_002260_090 Hb_000836_500 Hb_000836_500 Hb_000077_410--Hb_000836_500 Hb_002291_030 Hb_002291_030 Hb_000077_410--Hb_002291_030 Hb_007120_070 Hb_007120_070 Hb_003020_310--Hb_007120_070 Hb_078633_010 Hb_078633_010 Hb_003020_310--Hb_078633_010 Hb_023214_010 Hb_023214_010 Hb_003020_310--Hb_023214_010 Hb_148121_010 Hb_148121_010 Hb_003020_310--Hb_148121_010 Hb_001035_040 Hb_001035_040 Hb_003020_310--Hb_001035_040 Hb_000178_110--Hb_000836_500 Hb_029584_140 Hb_029584_140 Hb_000178_110--Hb_029584_140 Hb_000178_110--Hb_007120_070 Hb_000178_110--Hb_012725_110 Hb_012799_060 Hb_012799_060 Hb_000178_110--Hb_012799_060 Hb_000580_170 Hb_000580_170 Hb_000178_110--Hb_000580_170 Hb_004206_030 Hb_004206_030 Hb_012725_110--Hb_004206_030 Hb_002387_060 Hb_002387_060 Hb_012725_110--Hb_002387_060 Hb_002685_090 Hb_002685_090 Hb_012725_110--Hb_002685_090 Hb_000041_070 Hb_000041_070 Hb_012725_110--Hb_000041_070 Hb_012725_110--Hb_000836_500 Hb_012725_110--Hb_002291_030 Hb_014497_110 Hb_014497_110 Hb_002260_090--Hb_014497_110 Hb_001213_120 Hb_001213_120 Hb_002260_090--Hb_001213_120 Hb_011671_400 Hb_011671_400 Hb_002260_090--Hb_011671_400 Hb_003052_040 Hb_003052_040 Hb_002260_090--Hb_003052_040 Hb_012366_020 Hb_012366_020 Hb_002260_090--Hb_012366_020 Hb_005908_040 Hb_005908_040 Hb_002260_090--Hb_005908_040 Hb_000836_500--Hb_002291_030 Hb_002928_110 Hb_002928_110 Hb_000836_500--Hb_002928_110 Hb_000836_500--Hb_029584_140 Hb_002936_050 Hb_002936_050 Hb_000836_500--Hb_002936_050 Hb_002291_030--Hb_002928_110 Hb_012522_030 Hb_012522_030 Hb_002291_030--Hb_012522_030 Hb_002326_030 Hb_002326_030 Hb_002291_030--Hb_002326_030 Hb_001478_050 Hb_001478_050 Hb_002291_030--Hb_001478_050 Hb_002291_030--Hb_002387_060 Hb_092706_020 Hb_092706_020 Hb_002291_030--Hb_092706_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2625 0.461201 0.153049 0.636895 1.01808 2.28408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.09284 10.7473 11.4077 0.657354 0.284731

CAGE analysis