Hb_000077_420

Information

Type -
Description -
Location Contig77: 317469-323093
Sequence    

Annotation

kegg
ID rcu:RCOM_1175690
description hypothetical protein
nr
ID KDP24158.1
description hypothetical protein JCGZ_25815 [Jatropha curcas]
swissprot
ID Q1PEB4
description Uncharacterized protein At4g04980 OS=Arabidopsis thaliana GN=At4g04980 PE=2 SV=1
trembl
ID A0A067JMX1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25815 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57628: 317335-319424
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_420 0.0 - - hypothetical protein JCGZ_25815 [Jatropha curcas]
2 Hb_000907_150 0.1727255668 - - hypothetical protein L484_004295 [Morus notabilis]
3 Hb_000732_190 0.1805604868 - - structural molecule, putative [Ricinus communis]
4 Hb_010891_020 0.1899031384 - - Cucumisin precursor, putative [Ricinus communis]
5 Hb_110567_010 0.1944381872 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic-like [Jatropha curcas]
6 Hb_000465_150 0.200845218 - - PREDICTED: peroxisomal acyl-coenzyme A oxidase 1 [Jatropha curcas]
7 Hb_005015_110 0.2036931675 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Jatropha curcas]
8 Hb_002232_430 0.2047085173 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
9 Hb_152868_030 0.2057106088 - - abhydrolase domain containing, putative [Ricinus communis]
10 Hb_000258_090 0.2070224407 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
11 Hb_027380_190 0.20709854 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
12 Hb_001140_360 0.207763436 - - -
13 Hb_001300_170 0.2091112163 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000005_340 0.2109753151 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
15 Hb_002597_020 0.2142300398 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
16 Hb_008749_020 0.2154349125 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001195_220 0.2187039811 - - sugar transporter, putative [Ricinus communis]
18 Hb_000008_090 0.220120417 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
19 Hb_000465_050 0.2208195913 - - PREDICTED: DNA mismatch repair protein MSH4 [Jatropha curcas]
20 Hb_010872_050 0.2213513135 - - hypothetical protein B456_007G078100 [Gossypium raimondii]

Gene co-expression network

sample Hb_000077_420 Hb_000077_420 Hb_000907_150 Hb_000907_150 Hb_000077_420--Hb_000907_150 Hb_000732_190 Hb_000732_190 Hb_000077_420--Hb_000732_190 Hb_010891_020 Hb_010891_020 Hb_000077_420--Hb_010891_020 Hb_110567_010 Hb_110567_010 Hb_000077_420--Hb_110567_010 Hb_000465_150 Hb_000465_150 Hb_000077_420--Hb_000465_150 Hb_005015_110 Hb_005015_110 Hb_000077_420--Hb_005015_110 Hb_000220_110 Hb_000220_110 Hb_000907_150--Hb_000220_110 Hb_008749_020 Hb_008749_020 Hb_000907_150--Hb_008749_020 Hb_000172_280 Hb_000172_280 Hb_000907_150--Hb_000172_280 Hb_000907_150--Hb_000465_150 Hb_003227_010 Hb_003227_010 Hb_000907_150--Hb_003227_010 Hb_001616_070 Hb_001616_070 Hb_000907_150--Hb_001616_070 Hb_001140_360 Hb_001140_360 Hb_000732_190--Hb_001140_360 Hb_001728_020 Hb_001728_020 Hb_000732_190--Hb_001728_020 Hb_000979_110 Hb_000979_110 Hb_000732_190--Hb_000979_110 Hb_000331_510 Hb_000331_510 Hb_000732_190--Hb_000331_510 Hb_000926_260 Hb_000926_260 Hb_000732_190--Hb_000926_260 Hb_000012_240 Hb_000012_240 Hb_000732_190--Hb_000012_240 Hb_027654_080 Hb_027654_080 Hb_010891_020--Hb_027654_080 Hb_002766_050 Hb_002766_050 Hb_010891_020--Hb_002766_050 Hb_006120_150 Hb_006120_150 Hb_010891_020--Hb_006120_150 Hb_012340_060 Hb_012340_060 Hb_010891_020--Hb_012340_060 Hb_025787_010 Hb_025787_010 Hb_010891_020--Hb_025787_010 Hb_004208_140 Hb_004208_140 Hb_010891_020--Hb_004208_140 Hb_000953_040 Hb_000953_040 Hb_110567_010--Hb_000953_040 Hb_000866_140 Hb_000866_140 Hb_110567_010--Hb_000866_140 Hb_003417_030 Hb_003417_030 Hb_110567_010--Hb_003417_030 Hb_001195_020 Hb_001195_020 Hb_110567_010--Hb_001195_020 Hb_024714_070 Hb_024714_070 Hb_110567_010--Hb_024714_070 Hb_017914_010 Hb_017914_010 Hb_110567_010--Hb_017914_010 Hb_007416_110 Hb_007416_110 Hb_000465_150--Hb_007416_110 Hb_000465_150--Hb_005015_110 Hb_002486_080 Hb_002486_080 Hb_000465_150--Hb_002486_080 Hb_003025_030 Hb_003025_030 Hb_000465_150--Hb_003025_030 Hb_002232_430 Hb_002232_430 Hb_000465_150--Hb_002232_430 Hb_001493_150 Hb_001493_150 Hb_000465_150--Hb_001493_150 Hb_180378_010 Hb_180378_010 Hb_005015_110--Hb_180378_010 Hb_001571_060 Hb_001571_060 Hb_005015_110--Hb_001571_060 Hb_005015_110--Hb_002486_080 Hb_000139_340 Hb_000139_340 Hb_005015_110--Hb_000139_340 Hb_005015_110--Hb_007416_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0946993 0.133824 0.105127 0.0430107 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0521448 0.0547097 0.0521647 0.162923 0.0581656

CAGE analysis