Hb_000078_010

Information

Type -
Description -
Location Contig78: 42778-45401
Sequence    

Annotation

kegg
ID pop:POPTR_0006s06510g
description hypothetical protein
nr
ID XP_006381118.1
description hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5G670
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0006s06510g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57887: 42933-43643
cDNA
(Sanger)
(ID:Location)		 017_M19.ab1: 42933-43643

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000078_010 0.0 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
2 Hb_007810_030 0.0725727138 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
3 Hb_015934_020 0.0971870814 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
4 Hb_000367_280 0.1029449354 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
5 Hb_001213_120 0.1120043475 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
6 Hb_111648_010 0.1196517404 rubber biosynthesis Gene Name: REF1 rubber elongation factor [Hevea brasiliensis]
7 Hb_004297_040 0.1200965554 - - acyl CoA reductase [Hevea brasiliensis]
8 Hb_012395_210 0.1206600481 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000041_070 0.1244214204 - - hypothetical protein POPTR_0001s34870g [Populus trichocarpa]
10 Hb_012395_200 0.1303951627 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003060_030 0.1323189522 - - conserved hypothetical protein 16 [Hevea brasiliensis]
12 Hb_002685_090 0.1341419603 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
13 Hb_004206_030 0.1348363304 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
14 Hb_004453_140 0.1351673899 - - PREDICTED: uncharacterized protein LOC104880181 [Vitis vinifera]
15 Hb_103752_010 0.1366754884 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
16 Hb_000032_220 0.1372679768 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
17 Hb_001514_180 0.1381910588 transcription factor TF Family: M-type hypothetical protein JCGZ_16067 [Jatropha curcas]
18 Hb_000684_160 0.1407107272 - - PREDICTED: lipid phosphate phosphatase gamma, chloroplastic [Jatropha curcas]
19 Hb_002387_060 0.1412682735 - - conserved hypothetical protein [Ricinus communis]
20 Hb_011245_020 0.1436220958 - - Ferrochelatase [Medicago truncatula]

Gene co-expression network

sample Hb_000078_010 Hb_000078_010 Hb_007810_030 Hb_007810_030 Hb_000078_010--Hb_007810_030 Hb_015934_020 Hb_015934_020 Hb_000078_010--Hb_015934_020 Hb_000367_280 Hb_000367_280 Hb_000078_010--Hb_000367_280 Hb_001213_120 Hb_001213_120 Hb_000078_010--Hb_001213_120 Hb_111648_010 Hb_111648_010 Hb_000078_010--Hb_111648_010 Hb_004297_040 Hb_004297_040 Hb_000078_010--Hb_004297_040 Hb_007810_030--Hb_015934_020 Hb_007810_030--Hb_000367_280 Hb_011245_020 Hb_011245_020 Hb_007810_030--Hb_011245_020 Hb_007810_030--Hb_001213_120 Hb_000032_220 Hb_000032_220 Hb_007810_030--Hb_000032_220 Hb_005000_290 Hb_005000_290 Hb_015934_020--Hb_005000_290 Hb_002387_060 Hb_002387_060 Hb_015934_020--Hb_002387_060 Hb_015934_020--Hb_000032_220 Hb_002685_090 Hb_002685_090 Hb_015934_020--Hb_002685_090 Hb_001268_080 Hb_001268_080 Hb_000367_280--Hb_001268_080 Hb_000367_280--Hb_001213_120 Hb_000367_280--Hb_011245_020 Hb_000367_280--Hb_004297_040 Hb_078633_010 Hb_078633_010 Hb_000367_280--Hb_078633_010 Hb_001213_120--Hb_001268_080 Hb_001213_120--Hb_078633_010 Hb_001213_120--Hb_004297_040 Hb_001213_120--Hb_015934_020 Hb_001514_180 Hb_001514_180 Hb_111648_010--Hb_001514_180 Hb_116264_010 Hb_116264_010 Hb_111648_010--Hb_116264_010 Hb_000041_070 Hb_000041_070 Hb_111648_010--Hb_000041_070 Hb_024505_040 Hb_024505_040 Hb_111648_010--Hb_024505_040 Hb_000444_030 Hb_000444_030 Hb_111648_010--Hb_000444_030 Hb_004297_040--Hb_078633_010 Hb_005137_020 Hb_005137_020 Hb_004297_040--Hb_005137_020 Hb_001102_250 Hb_001102_250 Hb_004297_040--Hb_001102_250 Hb_004297_040--Hb_001268_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.5918 0.679697 0.355924 2.276 16.7804 42.4159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.6079 88.4049 85.2618 6.25218 0.503974

CAGE analysis