Hb_000078_030

Information

Type -
Description -
Location Contig78: 79372-91053
Sequence    

Annotation

kegg
ID rcu:RCOM_1074140
description hypothetical protein
nr
ID XP_002527173.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8TC07
description TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2
trembl
ID B9SMF4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1074140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57888: 86730-91185 , PASA_asmbl_57889: 90471-90606
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000078_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000193_230 0.0671001644 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
3 Hb_000284_010 0.0672428763 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
4 Hb_005016_130 0.0710856928 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
5 Hb_115919_020 0.071731751 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
6 Hb_001102_010 0.0725468125 - - PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]
7 Hb_002298_040 0.0779987531 - - PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
8 Hb_012799_060 0.0815460364 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
9 Hb_000580_170 0.0843663725 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
10 Hb_001741_080 0.0847777485 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
11 Hb_000787_070 0.0927063529 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
12 Hb_030765_020 0.0949797114 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_002221_080 0.096435937 - - PREDICTED: uncharacterized protein LOC105639992 [Jatropha curcas]
14 Hb_012305_060 0.0996023254 - - protein translocase, putative [Ricinus communis]
15 Hb_008408_030 0.1064535812 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
16 Hb_000143_050 0.1072497689 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]
17 Hb_116349_150 0.1087720206 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
18 Hb_060668_010 0.1093984196 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
19 Hb_006787_040 0.1106213835 - - polyadenylate-binding protein, putative [Ricinus communis]
20 Hb_010578_090 0.1197356472 - - HEV2.1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000078_030 Hb_000078_030 Hb_000193_230 Hb_000193_230 Hb_000078_030--Hb_000193_230 Hb_000284_010 Hb_000284_010 Hb_000078_030--Hb_000284_010 Hb_005016_130 Hb_005016_130 Hb_000078_030--Hb_005016_130 Hb_115919_020 Hb_115919_020 Hb_000078_030--Hb_115919_020 Hb_001102_010 Hb_001102_010 Hb_000078_030--Hb_001102_010 Hb_002298_040 Hb_002298_040 Hb_000078_030--Hb_002298_040 Hb_000193_230--Hb_002298_040 Hb_006787_040 Hb_006787_040 Hb_000193_230--Hb_006787_040 Hb_000193_230--Hb_115919_020 Hb_012305_060 Hb_012305_060 Hb_000193_230--Hb_012305_060 Hb_000193_230--Hb_000284_010 Hb_000284_010--Hb_115919_020 Hb_000284_010--Hb_005016_130 Hb_002221_080 Hb_002221_080 Hb_000284_010--Hb_002221_080 Hb_000284_010--Hb_002298_040 Hb_005016_130--Hb_115919_020 Hb_000787_070 Hb_000787_070 Hb_005016_130--Hb_000787_070 Hb_001741_080 Hb_001741_080 Hb_005016_130--Hb_001741_080 Hb_010578_090 Hb_010578_090 Hb_005016_130--Hb_010578_090 Hb_115919_020--Hb_000787_070 Hb_115919_020--Hb_002298_040 Hb_011457_100 Hb_011457_100 Hb_001102_010--Hb_011457_100 Hb_002835_170 Hb_002835_170 Hb_001102_010--Hb_002835_170 Hb_001102_010--Hb_000787_070 Hb_001102_010--Hb_005016_130 Hb_001102_010--Hb_000193_230 Hb_002298_040--Hb_005016_130 Hb_002298_040--Hb_010578_090 Hb_029879_080 Hb_029879_080 Hb_002298_040--Hb_029879_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.3712 2.42105 0.825756 1.80568 36.1573 51.3802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
77.6849 64.8848 47.1477 3.95315 0.694992

CAGE analysis