Hb_000078_100

Information

Type -
Description -
Location Contig78: 187115-203183
Sequence    

Annotation

kegg
ID rcu:RCOM_1074790
description WD-repeat protein, putative
nr
ID XP_012081216.1
description PREDICTED: topless-related protein 4-like isoform X2 [Jatropha curcas]
swissprot
ID Q27GK7
description Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2
trembl
ID A0A067KDE9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17042 PE=4 SV=1
Gene Ontology
ID GO:0006355
description topless-related protein 4-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57896: 188597-188878 , PASA_asmbl_57897: 190110-190597 , PASA_asmbl_57898: 199249-200340 , PASA_asmbl_57899: 200341-202312 , PASA_asmbl_57900: 201290-201435
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000078_100 0.0 - - PREDICTED: topless-related protein 4-like isoform X2 [Jatropha curcas]
2 Hb_002725_070 0.070175543 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
3 Hb_117950_020 0.0710464715 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
4 Hb_002820_040 0.0719310486 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004608_020 0.0751201084 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
6 Hb_000631_150 0.0793151911 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
7 Hb_005635_010 0.0811470335 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
8 Hb_000814_090 0.0813127277 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000017_340 0.0840392986 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
10 Hb_006913_040 0.086331442 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
11 Hb_005295_040 0.087360711 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
12 Hb_000172_550 0.0897949226 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
13 Hb_000317_440 0.090204004 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
14 Hb_000076_080 0.0927719662 - - PREDICTED: protein MOS2 [Jatropha curcas]
15 Hb_000849_100 0.0932215234 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
16 Hb_005214_160 0.0968353125 - - PREDICTED: heat shock 70 kDa protein, mitochondrial [Jatropha curcas]
17 Hb_153547_010 0.0998218775 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
18 Hb_000318_140 0.1000718992 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
19 Hb_000645_150 0.100573373 - - zinc finger protein, putative [Ricinus communis]
20 Hb_002097_090 0.1015678712 - - Splicing factor 3A subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_000078_100 Hb_000078_100 Hb_002725_070 Hb_002725_070 Hb_000078_100--Hb_002725_070 Hb_117950_020 Hb_117950_020 Hb_000078_100--Hb_117950_020 Hb_002820_040 Hb_002820_040 Hb_000078_100--Hb_002820_040 Hb_004608_020 Hb_004608_020 Hb_000078_100--Hb_004608_020 Hb_000631_150 Hb_000631_150 Hb_000078_100--Hb_000631_150 Hb_005635_010 Hb_005635_010 Hb_000078_100--Hb_005635_010 Hb_005295_040 Hb_005295_040 Hb_002725_070--Hb_005295_040 Hb_042083_070 Hb_042083_070 Hb_002725_070--Hb_042083_070 Hb_000814_090 Hb_000814_090 Hb_002725_070--Hb_000814_090 Hb_002725_070--Hb_002820_040 Hb_002725_070--Hb_117950_020 Hb_153547_010 Hb_153547_010 Hb_117950_020--Hb_153547_010 Hb_000317_440 Hb_000317_440 Hb_117950_020--Hb_000317_440 Hb_117950_020--Hb_000631_150 Hb_001431_070 Hb_001431_070 Hb_117950_020--Hb_001431_070 Hb_000318_140 Hb_000318_140 Hb_002820_040--Hb_000318_140 Hb_006913_040 Hb_006913_040 Hb_002820_040--Hb_006913_040 Hb_007416_310 Hb_007416_310 Hb_002820_040--Hb_007416_310 Hb_000645_150 Hb_000645_150 Hb_002820_040--Hb_000645_150 Hb_009118_010 Hb_009118_010 Hb_004608_020--Hb_009118_010 Hb_004608_020--Hb_000631_150 Hb_000116_170 Hb_000116_170 Hb_004608_020--Hb_000116_170 Hb_000457_060 Hb_000457_060 Hb_004608_020--Hb_000457_060 Hb_000017_340 Hb_000017_340 Hb_004608_020--Hb_000017_340 Hb_000631_150--Hb_000317_440 Hb_000134_360 Hb_000134_360 Hb_000631_150--Hb_000134_360 Hb_000849_100 Hb_000849_100 Hb_000631_150--Hb_000849_100 Hb_000631_150--Hb_000318_140 Hb_031754_010 Hb_031754_010 Hb_000631_150--Hb_031754_010 Hb_005635_010--Hb_000814_090 Hb_005635_010--Hb_005295_040 Hb_001040_160 Hb_001040_160 Hb_005635_010--Hb_001040_160 Hb_005635_010--Hb_002725_070 Hb_003299_090 Hb_003299_090 Hb_005635_010--Hb_003299_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.4988 15.3198 2.58326 6.71871 39.7662 43.8194
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.2678 11.0075 11.0734 17.3395 4.68981

CAGE analysis