Hb_000078_120

Information

Type -
Description -
Location Contig78: 210650-216656
Sequence    

Annotation

kegg
ID cit:102616781
description BRCA1-associated protein-like
nr
ID XP_012081217.1
description PREDICTED: BRCA1-associated protein [Jatropha curcas]
swissprot
ID Q99MP8
description BRCA1-associated protein OS=Mus musculus GN=Brap PE=2 SV=1
trembl
ID A0A067K237
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17043 PE=4 SV=1
Gene Ontology
ID GO:0000151
description brca1-associated protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57901: 210832-213741 , PASA_asmbl_57902: 214046-216387
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000078_120 0.0 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
2 Hb_006831_140 0.0468006679 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
3 Hb_002994_030 0.0519714333 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-like [Pyrus x bretschneideri]
4 Hb_000696_330 0.0584180095 - - PREDICTED: uncharacterized protein LOC105647254 [Jatropha curcas]
5 Hb_002078_350 0.0599726559 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
6 Hb_011386_010 0.0624087854 - - mitochondrial carrier protein, putative [Ricinus communis]
7 Hb_000708_030 0.0660311303 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
8 Hb_000948_160 0.0663953876 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
9 Hb_005054_110 0.066456799 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
10 Hb_029243_030 0.067305182 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
11 Hb_001876_050 0.0680253484 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
12 Hb_004567_090 0.0693875755 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
13 Hb_002110_190 0.0695036341 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
14 Hb_000392_430 0.0697701752 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
15 Hb_003680_120 0.0706852673 - - PREDICTED: E3 ubiquitin-protein ligase UPL7 [Jatropha curcas]
16 Hb_001470_030 0.0713509017 - - PREDICTED: MORC family CW-type zinc finger protein 3 isoform X2 [Jatropha curcas]
17 Hb_008847_030 0.0715408897 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
18 Hb_001314_050 0.0715955199 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
19 Hb_000917_230 0.0717387785 - - PREDICTED: coiled-coil domain-containing protein 130-like [Jatropha curcas]
20 Hb_007390_010 0.0720514449 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_000078_120 Hb_000078_120 Hb_006831_140 Hb_006831_140 Hb_000078_120--Hb_006831_140 Hb_002994_030 Hb_002994_030 Hb_000078_120--Hb_002994_030 Hb_000696_330 Hb_000696_330 Hb_000078_120--Hb_000696_330 Hb_002078_350 Hb_002078_350 Hb_000078_120--Hb_002078_350 Hb_011386_010 Hb_011386_010 Hb_000078_120--Hb_011386_010 Hb_000708_030 Hb_000708_030 Hb_000078_120--Hb_000708_030 Hb_006831_140--Hb_000708_030 Hb_093458_040 Hb_093458_040 Hb_006831_140--Hb_093458_040 Hb_001876_050 Hb_001876_050 Hb_006831_140--Hb_001876_050 Hb_001021_150 Hb_001021_150 Hb_006831_140--Hb_001021_150 Hb_006831_140--Hb_002078_350 Hb_000948_160 Hb_000948_160 Hb_002994_030--Hb_000948_160 Hb_002994_030--Hb_000696_330 Hb_189216_020 Hb_189216_020 Hb_002994_030--Hb_189216_020 Hb_002994_030--Hb_006831_140 Hb_001470_030 Hb_001470_030 Hb_002994_030--Hb_001470_030 Hb_000696_330--Hb_011386_010 Hb_004143_060 Hb_004143_060 Hb_000696_330--Hb_004143_060 Hb_000696_330--Hb_002078_350 Hb_000331_260 Hb_000331_260 Hb_000696_330--Hb_000331_260 Hb_001168_020 Hb_001168_020 Hb_000696_330--Hb_001168_020 Hb_002078_350--Hb_011386_010 Hb_156279_020 Hb_156279_020 Hb_002078_350--Hb_156279_020 Hb_000373_070 Hb_000373_070 Hb_002078_350--Hb_000373_070 Hb_002078_350--Hb_001470_030 Hb_000035_180 Hb_000035_180 Hb_002078_350--Hb_000035_180 Hb_005054_110 Hb_005054_110 Hb_011386_010--Hb_005054_110 Hb_000329_710 Hb_000329_710 Hb_011386_010--Hb_000329_710 Hb_002518_260 Hb_002518_260 Hb_011386_010--Hb_002518_260 Hb_011386_010--Hb_156279_020 Hb_000792_010 Hb_000792_010 Hb_011386_010--Hb_000792_010 Hb_003680_120 Hb_003680_120 Hb_000708_030--Hb_003680_120 Hb_000699_030 Hb_000699_030 Hb_000708_030--Hb_000699_030 Hb_000327_270 Hb_000327_270 Hb_000708_030--Hb_000327_270 Hb_005730_040 Hb_005730_040 Hb_000708_030--Hb_005730_040 Hb_000708_030--Hb_093458_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.30844 5.57733 4.76299 6.93999 4.14587 6.9628
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.78579 8.23432 5.16194 7.14643 6.74373

CAGE analysis