Hb_000078_130

Information

Type -
Description -
Location Contig78: 218932-221731
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57903: 219057-221643
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000078_130 0.0 - - -
2 Hb_003581_140 0.0750999866 - - PREDICTED: hypersensitive-induced response protein 1-like [Nelumbo nucifera]
3 Hb_001454_060 0.0766654399 - - uncharacterized protein LOC100527252 [Glycine max]
4 Hb_002014_080 0.0808341791 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
5 Hb_000490_030 0.0816428439 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
6 Hb_000230_330 0.0818883431 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
7 Hb_006091_030 0.0840926036 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
8 Hb_000161_030 0.0846689538 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
9 Hb_000172_400 0.0852276503 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
10 Hb_000984_180 0.0858831435 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO3 isoform X1 [Jatropha curcas]
11 Hb_000340_510 0.0873382444 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
12 Hb_001584_110 0.0874116295 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
13 Hb_022256_040 0.0888723892 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
14 Hb_002997_100 0.0908365781 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
15 Hb_002818_040 0.0946059197 - - tRNA synthetase-related family protein [Populus trichocarpa]
16 Hb_012654_010 0.0946330917 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
17 Hb_002377_050 0.0949923831 - - Agmatine deiminase, putative [Ricinus communis]
18 Hb_000608_120 0.096367465 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
19 Hb_000012_090 0.0966081907 - - 3'-5' exonuclease, putative [Ricinus communis]
20 Hb_000107_100 0.0970636988 - - hypothetical protein JCGZ_16208 [Jatropha curcas]

Gene co-expression network

sample Hb_000078_130 Hb_000078_130 Hb_003581_140 Hb_003581_140 Hb_000078_130--Hb_003581_140 Hb_001454_060 Hb_001454_060 Hb_000078_130--Hb_001454_060 Hb_002014_080 Hb_002014_080 Hb_000078_130--Hb_002014_080 Hb_000490_030 Hb_000490_030 Hb_000078_130--Hb_000490_030 Hb_000230_330 Hb_000230_330 Hb_000078_130--Hb_000230_330 Hb_006091_030 Hb_006091_030 Hb_000078_130--Hb_006091_030 Hb_000608_120 Hb_000608_120 Hb_003581_140--Hb_000608_120 Hb_003581_140--Hb_000490_030 Hb_002039_010 Hb_002039_010 Hb_003581_140--Hb_002039_010 Hb_002890_340 Hb_002890_340 Hb_003581_140--Hb_002890_340 Hb_000418_100 Hb_000418_100 Hb_003581_140--Hb_000418_100 Hb_003494_240 Hb_003494_240 Hb_001454_060--Hb_003494_240 Hb_001454_060--Hb_000608_120 Hb_000703_080 Hb_000703_080 Hb_001454_060--Hb_000703_080 Hb_000172_400 Hb_000172_400 Hb_001454_060--Hb_000172_400 Hb_001817_180 Hb_001817_180 Hb_001454_060--Hb_001817_180 Hb_024714_030 Hb_024714_030 Hb_002014_080--Hb_024714_030 Hb_000012_090 Hb_000012_090 Hb_002014_080--Hb_000012_090 Hb_014568_030 Hb_014568_030 Hb_002014_080--Hb_014568_030 Hb_000365_360 Hb_000365_360 Hb_002014_080--Hb_000365_360 Hb_000671_100 Hb_000671_100 Hb_002014_080--Hb_000671_100 Hb_002215_050 Hb_002215_050 Hb_002014_080--Hb_002215_050 Hb_001936_050 Hb_001936_050 Hb_000490_030--Hb_001936_050 Hb_029281_010 Hb_029281_010 Hb_000490_030--Hb_029281_010 Hb_000358_080 Hb_000358_080 Hb_000490_030--Hb_000358_080 Hb_000490_030--Hb_006091_030 Hb_000340_510 Hb_000340_510 Hb_000490_030--Hb_000340_510 Hb_002874_070 Hb_002874_070 Hb_000490_030--Hb_002874_070 Hb_001584_110 Hb_001584_110 Hb_000230_330--Hb_001584_110 Hb_000390_060 Hb_000390_060 Hb_000230_330--Hb_000390_060 Hb_001504_160 Hb_001504_160 Hb_000230_330--Hb_001504_160 Hb_000462_150 Hb_000462_150 Hb_000230_330--Hb_000462_150 Hb_003434_060 Hb_003434_060 Hb_000230_330--Hb_003434_060 Hb_000076_080 Hb_000076_080 Hb_000230_330--Hb_000076_080 Hb_006091_030--Hb_000358_080 Hb_006091_030--Hb_002874_070 Hb_000016_110 Hb_000016_110 Hb_006091_030--Hb_000016_110 Hb_000413_130 Hb_000413_130 Hb_006091_030--Hb_000413_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.995 20.336 5.11805 15.4751 79.9306 75.34
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.3431 27.2757 54.5881 21.61 8.09132

CAGE analysis