Hb_000078_140

Information

Type -
Description -
Location Contig78: 229021-245671
Sequence    

Annotation

kegg
ID rcu:RCOM_1074870
description nucleotide binding protein, putative
nr
ID XP_012081221.1
description PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
swissprot
ID Q9BZH6
description WD repeat-containing protein 11 OS=Homo sapiens GN=WDR11 PE=1 SV=1
trembl
ID A0A067K2D9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57904: 229188-233329 , PASA_asmbl_57905: 233538-241982 , PASA_asmbl_57906: 233590-235820 , PASA_asmbl_57908: 242232-242818 , PASA_asmbl_57909: 242880-245213
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000078_140 0.0 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
2 Hb_000139_080 0.0554180329 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
3 Hb_079526_040 0.0589348608 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
4 Hb_074197_040 0.0600618403 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
5 Hb_032202_220 0.0602803397 - - ring finger protein, putative [Ricinus communis]
6 Hb_003098_070 0.0603273167 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
7 Hb_001195_400 0.0619800791 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
8 Hb_159809_070 0.0623997762 - - phospholipase A-2-activating protein, putative [Ricinus communis]
9 Hb_000703_190 0.0635932387 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
10 Hb_000815_300 0.0653859755 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
11 Hb_006970_020 0.0660578456 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
12 Hb_000773_040 0.0672203855 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
13 Hb_006189_020 0.0679768061 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
14 Hb_001301_270 0.0691106643 - - PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
15 Hb_028487_070 0.0701417056 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003581_200 0.0714472339 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]
17 Hb_010863_050 0.074614843 - - OTU domain-containing protein 6B, putative [Ricinus communis]
18 Hb_000212_230 0.0751715942 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
19 Hb_073171_070 0.0754649963 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
20 Hb_001817_170 0.0758338891 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000078_140 Hb_000078_140 Hb_000139_080 Hb_000139_080 Hb_000078_140--Hb_000139_080 Hb_079526_040 Hb_079526_040 Hb_000078_140--Hb_079526_040 Hb_074197_040 Hb_074197_040 Hb_000078_140--Hb_074197_040 Hb_032202_220 Hb_032202_220 Hb_000078_140--Hb_032202_220 Hb_003098_070 Hb_003098_070 Hb_000078_140--Hb_003098_070 Hb_001195_400 Hb_001195_400 Hb_000078_140--Hb_001195_400 Hb_000139_080--Hb_003098_070 Hb_033312_040 Hb_033312_040 Hb_000139_080--Hb_033312_040 Hb_006189_020 Hb_006189_020 Hb_000139_080--Hb_006189_020 Hb_003626_070 Hb_003626_070 Hb_000139_080--Hb_003626_070 Hb_000169_020 Hb_000169_020 Hb_000139_080--Hb_000169_020 Hb_001518_080 Hb_001518_080 Hb_079526_040--Hb_001518_080 Hb_003581_200 Hb_003581_200 Hb_079526_040--Hb_003581_200 Hb_159809_070 Hb_159809_070 Hb_079526_040--Hb_159809_070 Hb_000046_500 Hb_000046_500 Hb_079526_040--Hb_000046_500 Hb_005650_010 Hb_005650_010 Hb_079526_040--Hb_005650_010 Hb_000815_300 Hb_000815_300 Hb_074197_040--Hb_000815_300 Hb_011377_040 Hb_011377_040 Hb_074197_040--Hb_011377_040 Hb_001301_270 Hb_001301_270 Hb_074197_040--Hb_001301_270 Hb_065968_010 Hb_065968_010 Hb_074197_040--Hb_065968_010 Hb_006970_020 Hb_006970_020 Hb_074197_040--Hb_006970_020 Hb_032202_220--Hb_001301_270 Hb_001876_040 Hb_001876_040 Hb_032202_220--Hb_001876_040 Hb_002774_190 Hb_002774_190 Hb_032202_220--Hb_002774_190 Hb_001157_230 Hb_001157_230 Hb_032202_220--Hb_001157_230 Hb_000061_180 Hb_000061_180 Hb_032202_220--Hb_000061_180 Hb_000365_230 Hb_000365_230 Hb_003098_070--Hb_000365_230 Hb_003098_070--Hb_006189_020 Hb_003098_070--Hb_033312_040 Hb_000476_060 Hb_000476_060 Hb_003098_070--Hb_000476_060 Hb_170138_010 Hb_170138_010 Hb_001195_400--Hb_170138_010 Hb_012733_040 Hb_012733_040 Hb_001195_400--Hb_012733_040 Hb_000359_210 Hb_000359_210 Hb_001195_400--Hb_000359_210 Hb_000185_220 Hb_000185_220 Hb_001195_400--Hb_000185_220 Hb_003206_110 Hb_003206_110 Hb_001195_400--Hb_003206_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.6599 4.45645 8.87746 8.84204 4.24342 4.44212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.09353 4.40996 5.23473 6.79223 9.54681

CAGE analysis