Hb_000078_170

Information

Type -
Description -
Location Contig78: 354923-361030
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000078_170 0.0 - - -
2 Hb_005962_010 0.1149654411 - - -
3 Hb_011639_150 0.1447814579 - - -
4 Hb_000330_080 0.1592928866 - - auxilin, putative [Ricinus communis]
5 Hb_008556_020 0.1656073557 - - -
6 Hb_001709_130 0.1663818687 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
7 Hb_002311_230 0.203161629 - - -
8 Hb_000703_300 0.2189238435 - - -
9 Hb_001766_040 0.2273308209 - - chaperone clpb, putative [Ricinus communis]
10 Hb_001009_100 0.2303411911 - - -
11 Hb_004884_020 0.2335783825 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X2 [Jatropha curcas]
12 Hb_002637_020 0.2424879922 - - -
13 Hb_119886_040 0.2438118757 - - -
14 Hb_005527_030 0.2455235343 - - PREDICTED: pentatricopeptide repeat-containing protein At3g42630 isoform X1 [Jatropha curcas]
15 Hb_000513_070 0.2471334509 - - PREDICTED: cysteine-rich receptor-like protein kinase 42 [Jatropha curcas]
16 Hb_032920_100 0.2472291251 - - hypothetical protein POPTR_0002s00940g, partial [Populus trichocarpa]
17 Hb_007044_010 0.2546616208 - - -
18 Hb_008123_010 0.2565329186 - - -
19 Hb_001366_160 0.2571955226 - - -
20 Hb_000139_150 0.2573217845 - - transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_000078_170 Hb_000078_170 Hb_005962_010 Hb_005962_010 Hb_000078_170--Hb_005962_010 Hb_011639_150 Hb_011639_150 Hb_000078_170--Hb_011639_150 Hb_000330_080 Hb_000330_080 Hb_000078_170--Hb_000330_080 Hb_008556_020 Hb_008556_020 Hb_000078_170--Hb_008556_020 Hb_001709_130 Hb_001709_130 Hb_000078_170--Hb_001709_130 Hb_002311_230 Hb_002311_230 Hb_000078_170--Hb_002311_230 Hb_005962_010--Hb_008556_020 Hb_005962_010--Hb_002311_230 Hb_005962_010--Hb_011639_150 Hb_001766_040 Hb_001766_040 Hb_005962_010--Hb_001766_040 Hb_119886_040 Hb_119886_040 Hb_005962_010--Hb_119886_040 Hb_011639_150--Hb_008556_020 Hb_011639_150--Hb_001709_130 Hb_011639_150--Hb_119886_040 Hb_011639_150--Hb_002311_230 Hb_032920_100 Hb_032920_100 Hb_000330_080--Hb_032920_100 Hb_000330_080--Hb_001709_130 Hb_008123_010 Hb_008123_010 Hb_000330_080--Hb_008123_010 Hb_004884_020 Hb_004884_020 Hb_000330_080--Hb_004884_020 Hb_003058_020 Hb_003058_020 Hb_000330_080--Hb_003058_020 Hb_008556_020--Hb_119886_040 Hb_008556_020--Hb_002311_230 Hb_007044_010 Hb_007044_010 Hb_008556_020--Hb_007044_010 Hb_001709_130--Hb_004884_020 Hb_001009_100 Hb_001009_100 Hb_001709_130--Hb_001009_100 Hb_004361_020 Hb_004361_020 Hb_001709_130--Hb_004361_020 Hb_000483_180 Hb_000483_180 Hb_002311_230--Hb_000483_180 Hb_002311_230--Hb_119886_040 Hb_002311_230--Hb_007044_010 Hb_011639_010 Hb_011639_010 Hb_002311_230--Hb_011639_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.84266 5.67328 0.792035 0.9926 24.6702 10.1125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.648738 0.742061 0.846332 5.85647 17.2946

CAGE analysis