Hb_000080_060

Information

Type -
Description -
Location Contig80: 20037-23375
Sequence    

Annotation

kegg
ID rcu:RCOM_1204830
description DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide, putative
nr
ID AAK12101.1
description RNA polymerase I, II and III subunit RPB8, partial [Manihot esculenta]
swissprot
ID O81097
description DNA-directed RNA polymerases II and V subunit 8A OS=Arabidopsis thaliana GN=NRPB8A PE=1 SV=1
trembl
ID Q9AXJ3
description RNA polymerase I, II and III subunit RPB8 (Fragment) OS=Manihot esculenta PE=2 SV=1
Gene Ontology
ID GO:0000418
description dna-directed rna polymerases iv and v subunit 8b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58721: 22433-22588 , PASA_asmbl_58722: 19886-23466 , PASA_asmbl_58723: 21806-22022 , PASA_asmbl_58724: 19864-23337
cDNA
(Sanger)
(ID:Location)		 017_N03.ab1: 20047-23381

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000080_060 0.0 - - RNA polymerase I, II and III subunit RPB8, partial [Manihot esculenta]
2 Hb_004545_060 0.0852642884 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
3 Hb_010180_010 0.088730376 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
4 Hb_004944_010 0.0925664121 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
5 Hb_143398_010 0.0951371067 - - PREDICTED: peter Pan-like protein [Jatropha curcas]
6 Hb_012008_020 0.0952829781 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
7 Hb_000045_090 0.0954473576 - - PREDICTED: syntaxin-31 [Jatropha curcas]
8 Hb_141131_010 0.0986232188 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
9 Hb_000620_080 0.0992363168 - - hypothetical protein F775_32679 [Aegilops tauschii]
10 Hb_010180_020 0.0997466044 - - hypothetical protein glysoja_030394 [Glycine soja]
11 Hb_001699_040 0.1014970346 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
12 Hb_114343_010 0.1022751058 - - PREDICTED: uncharacterized protein LOC105647831 [Jatropha curcas]
13 Hb_144598_030 0.1026131113 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
14 Hb_004306_020 0.1031265476 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
15 Hb_002217_310 0.1032913044 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
16 Hb_004072_020 0.1041956705 - - PREDICTED: uncharacterized protein LOC105635274 [Jatropha curcas]
17 Hb_001998_230 0.1048314979 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
18 Hb_004128_190 0.1058598394 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
19 Hb_000155_180 0.1066771869 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
20 Hb_010691_060 0.1095322739 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]

Gene co-expression network

sample Hb_000080_060 Hb_000080_060 Hb_004545_060 Hb_004545_060 Hb_000080_060--Hb_004545_060 Hb_010180_010 Hb_010180_010 Hb_000080_060--Hb_010180_010 Hb_004944_010 Hb_004944_010 Hb_000080_060--Hb_004944_010 Hb_143398_010 Hb_143398_010 Hb_000080_060--Hb_143398_010 Hb_012008_020 Hb_012008_020 Hb_000080_060--Hb_012008_020 Hb_000045_090 Hb_000045_090 Hb_000080_060--Hb_000045_090 Hb_010180_020 Hb_010180_020 Hb_004545_060--Hb_010180_020 Hb_004545_060--Hb_000045_090 Hb_002078_150 Hb_002078_150 Hb_004545_060--Hb_002078_150 Hb_000103_560 Hb_000103_560 Hb_004545_060--Hb_000103_560 Hb_141131_010 Hb_141131_010 Hb_004545_060--Hb_141131_010 Hb_003038_030 Hb_003038_030 Hb_004545_060--Hb_003038_030 Hb_010180_010--Hb_143398_010 Hb_001998_230 Hb_001998_230 Hb_010180_010--Hb_001998_230 Hb_004306_020 Hb_004306_020 Hb_010180_010--Hb_004306_020 Hb_002890_140 Hb_002890_140 Hb_010180_010--Hb_002890_140 Hb_000329_030 Hb_000329_030 Hb_010180_010--Hb_000329_030 Hb_010180_010--Hb_010180_020 Hb_000349_060 Hb_000349_060 Hb_004944_010--Hb_000349_060 Hb_000690_080 Hb_000690_080 Hb_004944_010--Hb_000690_080 Hb_004944_010--Hb_141131_010 Hb_000457_110 Hb_000457_110 Hb_004944_010--Hb_000457_110 Hb_003874_020 Hb_003874_020 Hb_004944_010--Hb_003874_020 Hb_004944_010--Hb_003038_030 Hb_002271_020 Hb_002271_020 Hb_143398_010--Hb_002271_020 Hb_009557_070 Hb_009557_070 Hb_143398_010--Hb_009557_070 Hb_002473_130 Hb_002473_130 Hb_143398_010--Hb_002473_130 Hb_143398_010--Hb_000045_090 Hb_143398_010--Hb_000329_030 Hb_003010_030 Hb_003010_030 Hb_012008_020--Hb_003010_030 Hb_001358_030 Hb_001358_030 Hb_012008_020--Hb_001358_030 Hb_012008_020--Hb_009557_070 Hb_000959_260 Hb_000959_260 Hb_012008_020--Hb_000959_260 Hb_002660_080 Hb_002660_080 Hb_012008_020--Hb_002660_080 Hb_002391_300 Hb_002391_300 Hb_012008_020--Hb_002391_300 Hb_002774_060 Hb_002774_060 Hb_000045_090--Hb_002774_060 Hb_000045_090--Hb_009557_070 Hb_000045_090--Hb_000329_030 Hb_005686_060 Hb_005686_060 Hb_000045_090--Hb_005686_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.9145 21.7644 33.7247 78.7729 61.8579 162.325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.2708 112.348 56.0984 35.5953 26.9582

CAGE analysis