Hb_000080_160

Information

Type -
Description -
Location Contig80: 119280-121314
Sequence    

Annotation

kegg
ID pda:103711600
description peroxisomal membrane protein 13-like
nr
ID XP_007049511.1
description Peroxin 13 [Theobroma cacao]
swissprot
ID Q9SRR0
description Peroxisomal membrane protein 13 OS=Arabidopsis thaliana GN=PEX13 PE=1 SV=1
trembl
ID A0A061DUN4
description Peroxin 13 OS=Theobroma cacao GN=TCM_002568 PE=4 SV=1
Gene Ontology
ID GO:0044765
description peroxisomal membrane protein 13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000080_160 0.0 - - Peroxin 13 [Theobroma cacao]
2 Hb_002722_010 0.181866565 - - Disease resistance response protein, putative [Ricinus communis]
3 Hb_006472_080 0.2498892393 - - -
4 Hb_021650_020 0.2520821204 - - nitrate transporter, putative [Ricinus communis]
5 Hb_000618_090 0.255834581 - - -
6 Hb_003994_130 0.2642536926 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1-like [Jatropha curcas]
7 Hb_001021_070 0.282556703 - - unnamed protein product [Vitis vinifera]
8 Hb_006472_070 0.2825981212 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
9 Hb_000094_040 0.2832110792 - - -
10 Hb_000479_110 0.2865714398 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
11 Hb_105328_010 0.2875879716 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]
12 Hb_000816_260 0.2889170378 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
13 Hb_089206_010 0.292664874 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
14 Hb_000883_170 0.2942593362 - - senescence-associated family protein [Populus trichocarpa]
15 Hb_000030_160 0.2959663389 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 7-like [Jatropha curcas]
16 Hb_000739_240 0.2965016665 - - PREDICTED: armadillo repeat-containing kinesin-like protein 2 isoform X1 [Jatropha curcas]
17 Hb_000078_090 0.2966744815 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
18 Hb_134015_010 0.2969705863 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
19 Hb_004125_010 0.2986978548 - - PREDICTED: uncharacterized protein LOC105632163 [Jatropha curcas]
20 Hb_000260_400 0.2990904025 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]

Gene co-expression network

sample Hb_000080_160 Hb_000080_160 Hb_002722_010 Hb_002722_010 Hb_000080_160--Hb_002722_010 Hb_006472_080 Hb_006472_080 Hb_000080_160--Hb_006472_080 Hb_021650_020 Hb_021650_020 Hb_000080_160--Hb_021650_020 Hb_000618_090 Hb_000618_090 Hb_000080_160--Hb_000618_090 Hb_003994_130 Hb_003994_130 Hb_000080_160--Hb_003994_130 Hb_001021_070 Hb_001021_070 Hb_000080_160--Hb_001021_070 Hb_000544_160 Hb_000544_160 Hb_002722_010--Hb_000544_160 Hb_010712_070 Hb_010712_070 Hb_002722_010--Hb_010712_070 Hb_000030_160 Hb_000030_160 Hb_002722_010--Hb_000030_160 Hb_078897_010 Hb_078897_010 Hb_002722_010--Hb_078897_010 Hb_002722_010--Hb_021650_020 Hb_105328_010 Hb_105328_010 Hb_006472_080--Hb_105328_010 Hb_001085_150 Hb_001085_150 Hb_006472_080--Hb_001085_150 Hb_000820_060 Hb_000820_060 Hb_006472_080--Hb_000820_060 Hb_006472_070 Hb_006472_070 Hb_006472_080--Hb_006472_070 Hb_000820_050 Hb_000820_050 Hb_006472_080--Hb_000820_050 Hb_000320_260 Hb_000320_260 Hb_006472_080--Hb_000320_260 Hb_009288_030 Hb_009288_030 Hb_021650_020--Hb_009288_030 Hb_000012_320 Hb_000012_320 Hb_021650_020--Hb_000012_320 Hb_000244_150 Hb_000244_150 Hb_021650_020--Hb_000244_150 Hb_001476_130 Hb_001476_130 Hb_021650_020--Hb_001476_130 Hb_021650_020--Hb_006472_080 Hb_000816_260 Hb_000816_260 Hb_000618_090--Hb_000816_260 Hb_000094_040 Hb_000094_040 Hb_000618_090--Hb_000094_040 Hb_000618_090--Hb_003994_130 Hb_063943_010 Hb_063943_010 Hb_000618_090--Hb_063943_010 Hb_000964_070 Hb_000964_070 Hb_000618_090--Hb_000964_070 Hb_000088_190 Hb_000088_190 Hb_003994_130--Hb_000088_190 Hb_001511_050 Hb_001511_050 Hb_003994_130--Hb_001511_050 Hb_004100_050 Hb_004100_050 Hb_003994_130--Hb_004100_050 Hb_000739_240 Hb_000739_240 Hb_003994_130--Hb_000739_240 Hb_171900_040 Hb_171900_040 Hb_003994_130--Hb_171900_040 Hb_006905_030 Hb_006905_030 Hb_003994_130--Hb_006905_030 Hb_001646_020 Hb_001646_020 Hb_001021_070--Hb_001646_020 Hb_000479_110 Hb_000479_110 Hb_001021_070--Hb_000479_110 Hb_052135_020 Hb_052135_020 Hb_001021_070--Hb_052135_020 Hb_002687_060 Hb_002687_060 Hb_001021_070--Hb_002687_060 Hb_005298_020 Hb_005298_020 Hb_001021_070--Hb_005298_020 Hb_022092_010 Hb_022092_010 Hb_001021_070--Hb_022092_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.164972 0.0526917 0.265979 0.19442 0.0883033 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.204596 0.184366 0.113474

CAGE analysis